RNAz cluster #63519

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Length	84
Position	60,561,946 - 60,562,030
Average P	0.978797
Maximum P	0.993105
Strand winner	+

Structure	Start	End	Strand	N	Length	ID	SCI	z	P
#119689	60,561,946	60,562,030	+	6	86	82.51	1.04	-4.94	0.993105
#119691	60,561,946	60,562,030	-	6	86	82.51	0.8	-3.8	0.964489

Overview

RNA annotation

RNAdb

ID	E-value	Identity	Strand	Name
LIT1559	7.6e-34	100	+	miR-1 Homo sapiens (combinedlit)
LIT1560	4.5e-29	96	+	miR-1 Mus musculus (combinedlit)
LIT1809	3.6e-11	88.52	+	miR-1 Homo sapiens (combinedlit)
LIT1810	8.8e-09	86.89	+	miR-1 Mus musculus (combinedlit)

Rfam

ID	E-value	Identity	Strand	Name
RF00103	1.2e-29	96	+	mir-1
RF00103	9.4e-12	88.52	+	mir-1

microRNA registry

ID	E-value	Identity	Strand	Name
hsa-mir-1-1	2.6e-36	100	+	hsa-mir-1-1
mmu-mir-1-1	1.5e-31	96	+	mmu-mir-1-1
gga-mir-1-1	8.4e-21	93.44	+	gga-mir-1-1
gga-mir-1-2	1.2e-13	88.52	+	gga-mir-1-2
hsa-mir-1-2	1.2e-13	88.52	+	hsa-mir-1-2
mmu-mir-1-2	3e-11	86.89	+	mmu-mir-1-2
gga-mir-1b	1.1e-07	96.3	+	gga-mir-1b
cbr-mir-1	1.1e-07	100	+	cbr-mir-1
cel-mir-1	1.1e-07	100	+	cel-mir-1

UTRdb

No hits below threshold in UTRdb

NONCODE

No hits below threshold in NONCODE

Coding gene annotation

Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
NM_178463	Chromosome 20 open reading frame 166	+

RefSeq genes

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
NM_178463	Chromosome 20 open reading frame 166	+

Genscan predictions

ID	Strand	Exon	Intron
NT_035608.1	+

Geneid predictions

ID	Strand	Exon	Intron
chr20_784.1	+

EST

ID	Strand	Exon	Intron
F32475	?