RNAz cluster #80237
Summary
| Genome/Assembly |
hg17 |
| Chromosome/Contig | chr5 |
| Length |
79 |
| Position |
40,868,515 - 40,868,594 |
| Average P |
0.902473 |
| Maximum P |
0.929942 |
| Strand winner |
+ |
| Structure | Start | End | Strand |
N | Length | ID | SCI | z | P |
|---|
|
#145108 |
40,868,515 |
40,868,594 |
+ |
6 |
81 |
78.66 |
0.6 |
-2.25 |
0.929942 |
|
#145109 |
40,868,515 |
40,868,594 |
- |
6 |
81 |
78.66 |
0.69 |
-1.7 |
0.875004 |
Overview
RNA annotation
RNAdb
| ID | E-value | Identity | Strand | Name |
|---|
|
LIT1154 |
5.7e-16 |
92.98 |
- |
MBII-240 Mus musculus (combinedlit) |
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
| ID | E-value | Identity | Strand | Name |
|---|
|
n1449 |
2.6e-17 |
92.98 |
- |
snoRNA |
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon |
Intron | 5'-UTR | CDS | 3'-UTR |
|---|
| BC067790 |
Hypothetical protein (Fragment). |
- |
 |
 |
|
|
|
| D23661 |
Ribosomal protein L37 |
- |
|
|
|
|
|
RefSeq genes
| ID | Name | Strand | Exon |
Intron | 5'-UTR | CDS | 3'-UTR |
|---|
| NM_000997 |
Ribosomal protein L37 |
- |
|
|
|
|
|
Genscan predictions
No Genscan gene prediction in this region.
Geneid predictions
| ID | Strand | Exon |
Intron |
|---|
| chr5_335.1 |
- |
|
|
EST