RNAz cluster #85871

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Length	138
Position	168,127,712 - 168,127,850
Average P	0.989124
Maximum P	0.999209
Strand winner	-

Structure	Start	End	Strand	N	Length	ID	SCI	z	P
#155086	168,127,712	168,127,813	+	6	120	74.42	0.68	-1.89	0.975755
#155091	168,127,712	168,127,813	-	6	120	74.42	0.65	-2.17	0.985951
#155094	168,127,734	168,127,850	+	5	120	77.21	0.81	-2.47	0.99558
#155097	168,127,734	168,127,850	-	5	120	77.21	0.84	-3.49	0.999209

Overview

RNA annotation

RNAdb

ID	E-value	Identity	Strand	Name
LIT2842	0	100	-	miR-218 Homo sapiens (combinedlit)
LIT2788	5.60519e-45	95.45	-	miR-218 Rattus norvegicus (combinedlit)
LIT2787	5.60519e-45	95.45	-	miR-218 Mus musculus (combinedlit)

Rfam

ID	E-value	Identity	Strand	Name
RF00255	0	100	-	mir-218

microRNA registry

ID	E-value	Identity	Strand	Name
hsa-mir-218-2	0	100	-	hsa-mir-218-2
rno-mir-218-2	0	95.45	-	rno-mir-218-2
mmu-mir-218-2	0	95.45	-	mmu-mir-218-2
gga-mir-218-2	5.7e-20	90.28	-	gga-mir-218-2
gga-mir-218-3	4.9e-08	100	-	gga-mir-218-3
gga-mir-218-1	4.9e-08	100	-	gga-mir-218-1
hsa-mir-218-1	4.9e-08	100	-	hsa-mir-218-1
rno-mir-218-1	7.7e-07	100	-	rno-mir-218-1
mmu-mir-218-1	7.7e-07	100	-	mmu-mir-218-1

UTRdb

No hits below threshold in UTRdb

NONCODE

No hits below threshold in NONCODE

Coding gene annotation

Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq

No gene from this set in this region.

RefSeq genes

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
NM_003062	Slit homolog 3	-

Genscan predictions

ID	Strand	Exon	Intron
NT_023133.202	-

Geneid predictions

ID	Strand	Exon	Intron
chr5_1357.1	-

EST

ID	Strand	Exon	Intron
BI012276	-