RNAz cluster #107113
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr9 |
| Length | 326 |
| Position | 125,537,083 - 125,537,409 |
| Average P | 0.800554 |
| Maximum P | 0.99804 |
| Strand winner | + |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #192496 | 125,537,083 | 125,537,186 | + | 5 | 118 | 77.8 | 0.48 | -2.06 | 0.807773 |
| #192497 | 125,537,083 | 125,537,186 | - | 5 | 118 | 77.8 | 0.47 | -2.01 | 0.746031 |
| #192501 | 125,537,146 | 125,537,265 | - | 6 | 120 | 90.08 | 0.89 | -1.46 | 0.709346 |
| #192504 | 125,537,226 | 125,537,345 | + | 5 | 119 | 93.78 | 0.86 | -2.48 | 0.99804 |
| #192505 | 125,537,226 | 125,537,345 | - | 5 | 119 | 93.78 | 0.84 | -2.04 | 0.98162 |
| #192506 | 125,537,265 | 125,537,384 | + | 5 | 120 | 88.94 | 0.68 | -2.38 | 0.687655 |
| #192509 | 125,537,265 | 125,537,384 | - | 5 | 120 | 88.94 | 0.72 | -2.69 | 0.923616 |
| #192510 | 125,537,305 | 125,537,409 | - | 5 | 116 | 85.74 | 0.68 | -1.74 | 0.550354 |
Overview
RNA annotation
RNAdb
| ID | E-value | Identity | Strand | Name |
|---|---|---|---|---|
| FT24942 | 0 | 94.14 | - | TF16502 Mus musculus (fantom2) |
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
No hits below threshold in NONCODE
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| BC002326 | Mitogen-activated protein kinase associated protein 1 | - |  |
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RefSeq genes
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| NM_024117 | Mitogen-activated protein kinase associated | - | |
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Genscan predictions
No Genscan gene prediction in this region.
Geneid predictions
No Geneid gene prediction in this region.
EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| AA341882 | - | |
|
| AW246397 | ? | |
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