Structure #1392

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr22
Strand	-
Position	18,488,478 - 18,488,534
Number of sequences	6
Organisms	human, mouse, rat, dog, chicken, fugu, zebrafish
Mean pairwise identity	72.53
Columns	59
Mean single MFE	-17.94
Consensus MFE	-11.09
Combinations/base pair	21 / 14 = 1.50
SCI	0.62
z-score	-2.01
RNA class probability	0.980815

This structure is part of cluster 64435

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 59
 Columns: 59
 Strand: +
 Mean pairwise identity:  72.53
 Mean single sequence MFE: -17.94
 Consensus MFE: -11.09
 Energy contribution: -10.62
 Covariance contribution:  -0.47
 Mean z-score:  -2.01
 Structure conservation index:   0.62
 SVM decision value:   1.87
 SVM RNA-class probability: 0.980815
 Prediction: RNA

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>hg17.chr22/18488534-18488478
UGGCAGACAGAAAAAGCACCCGCCUGGAAGUAUAGUCAGAUGCAGAGUGAGUCUGC
..((((((........((((.((((((........))))..)).).))).)))))) ( -12.30)
>mm5.chr16/80784055-80784111
UGGCAGAUGGAAAAAGCACCAGACUGGAGCUGCAGCCAGGUGCAGAGUGAAUCUGC
..((((((.......(((((.(.(((......))).).))))).......)))))) ( -18.34)
>canFam1.chr26/9778990-9779046
UGGCAGACGGAAAAAGCACCCGCCUGGGGCUGCAGCCGGAUGCAGAGUGAGUCUGC
..((((((.......(((.(((.(((......))).))).))).......)))))) ( -20.34)
>galGal2.chr15/1292237-1292179
UUGCAGACAGAAAAAGCACCUGAACUGAAGACUGCAGUUCAGUACAGAGUGAGUCUGC
..((((((........((((((.((((((........)))))).))).))).)))))) ( -19.10)
>fr1.chrUn/277631157-277631214
UAGCAGGCGAAAAAAGUUCCAGGCUGGAGUGAGCAGCAAGGAACAGAGUGGGCCCGC
..((.(((..(....(((((..((((.......))))..)))))....)..))).)) ( -18.90)
>danRer1.chr5/3207089-3207032
UAGCAGACAGAAAAAGUCUAAGGCUGGAGGUAUCUGCCUUACACAGAGUGAGUCUGC
..((((((.......((.((((((.(((....))))))))).)).......)))))) ( -18.64)
>consensus
UGGCAGACAGAAAAAGCACCAGA_CUGGAG_CUG_CAGCCAGAUACAGAGUGAGUCUGC
..((((((.......(((((....(((........)))...))))).......)))))) (-11.09 = -10.62 +  -0.47)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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