Structure #15072

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr1
Strand	+
Position	116,082,263 - 116,082,383
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	85.28
Columns	120
Mean single MFE	-32.6
Consensus MFE	-24.11
Combinations/base pair	29 / 26 = 1.12
SCI	0.74
z-score	-1.92
RNA class probability	0.821672

This structure is part of cluster 6111

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  85.28
 Mean single sequence MFE: -32.60
 Consensus MFE: -24.11
 Energy contribution: -24.05
 Covariance contribution:  -0.06
 Mean z-score:  -1.92
 Structure conservation index:   0.74
 SVM decision value:   0.68
 SVM RNA-class probability: 0.821672
 Prediction: RNA

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>hg17.chr1/116082263-116082383
CAGAUGUUUGGAAAUAUCUGGGUAUUUUGGCACUUAACAGCAGCAACAGCUGGAUAAUGGAAUUAAUUUUUCACUUUUCAGUCAUCUCUUGACAUGGGAUGGACAGAGUCUUAUCAGCCA
((((((((....)))))))).......((((.........((((....))))(((((.((((......))))(((((....(((((((.......)))))))..))))).))))).)))) ( -31.50)
>mm5.chr3/58620849-58620729
CAGAUGUUUAGAAACAUCUGGAUAUUUGGGCACCUCACAGCAGUAACAGCUGGAUAAUGGAAUUAAUUUUUCACUCUUUAGUCAUCACUUGCCAACAAAUGGACAGAGUCCUAUCAGCCA
((((((((((((....))))))))))))(((......((((.......))))((((..((((......))))(((((...(((..((.(((....))).))))))))))..)))).))). ( -30.60)
>rn3.chr2/61144864-61144744
CAGAUGUUUAGAAACAUCUGGAUAUUUGGUCACCUCACAGCGGUAACAGCUGGAUAACAGAAUUAAUUUUUCACUCCUUAGUCAUCACUUGACAUCGGAUGGACAGAGUCCUAUCAGCCA
((((((((((((....))))))))))))((.(((.......))).)).(((((......(((.......)))..(((...((((.....))))...))).((((...))))..))))).. ( -29.60)
>canFam1.chr17/56156245-56156365
CAGAUGUUUGGGAACAUCUGGGUAUUUUGGCAACCAGCAGCAACAACAGCUGGAUAAUGGAAUUCAUGUUUCCCUUUGUAGUCAUCACUUGACAUCGGGUGGACAGAGUCUCACCAGCCA
((((((((....)))))))).......((((..(((((..........)))))....((..((((.((((..(((..((.((((.....)))))).)))..))))))))..))...)))) ( -38.70)
>consensus
CAGAUGUUUAGAAACAUCUGGAUAUUUGGGCACCUAACAGCAGCAACAGCUGGAUAAUGGAAUUAAUUUUUCACUCUUUAGUCAUCACUUGACAUCGGAUGGACAGAGUCCUAUCAGCCA
((((((((....))))))))........(((......((((.......))))............................((((.....))))....(((((((...)))).))).))). (-24.11 = -24.05 +  -0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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