Structure #15332

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr1
Strand	+
Position	119,219,531 - 119,219,649
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	94.57
Columns	120
Mean single MFE	-29.78
Consensus MFE	-26.64
Combinations/base pair	35 / 33 = 1.06
SCI	0.89
z-score	-1.96
RNA class probability	0.889436

This structure is part of cluster 6258

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  94.57
 Mean single sequence MFE: -29.77
 Consensus MFE: -26.64
 Energy contribution: -26.20
 Covariance contribution:  -0.44
 Mean z-score:  -1.96
 Structure conservation index:   0.89
 SVM decision value:   0.96
 SVM RNA-class probability: 0.889436
 Prediction: RNA

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>hg17.chr1/119219531-119219649
ACAGGAAGAGAUAAACACCCUUCAUAUAUUUCCUCUCACCCCCAACUGCAAGGAAAACAGUAACACUAAUUAGUUGUAACAGGGUGUUCAUUUCACACAGGUCUCAGCAGGUUGCCCU
..(((..(((((.((((((((.......((((((..((........))..))))))...((.(((((....)).))).)))))))))).)))))............((.....))))) ( -27.10)
>mm5.chr3/61373898-61373778
ACAGGAAGGGAUAAACACCCUUCACGUAUUUCCUCUCACCCCCAACUGCAAGGAAAACAGUAACACUAAUUAGUUGUAACGGGGUGUUCAUUUCACACAGGUCUCUCAGCAGGCCGCCCU
..(((..(..((.((((((((....((.((((((..((........))..)))))))).((.(((((....)).))).)))))))))).))..).....(((((......)))))..))) ( -32.40)
>rn3.chr2/64276045-64275925
ACAGGAAGGGAUAAACACCCUUCAUGUAUUUCCUCUCACCCCCAACUGCAAGGAAAACAGUAACACUAAUUAGUUGUAACGGGGUGUUCAUUUCACACAGGUCUCUCAGCAGGCCGCCCU
..(((..(..((.((((((((...(((.((((((..((........))..)))))))))((.(((((....)).))).)))))))))).))..).....(((((......)))))..))) ( -33.10)
>canFam1.chr17/58966030-58966148
ACAGGAAGGGAUAAACACCCUUCAUAGAUUUCCUCUCACUCCCAACUGCAAGGAAAACAGUAACACUAAUUAGUUGUAACAGGGUGUUCAUUUCACACAGUUCUCAGCAGGUUGCCCU
..(((..(..((.((((((((.....(.((((((..((........))..)))))).).((.(((((....)).))).)))))))))).))..)............((.....))))) ( -26.50)
>consensus
ACAGGAAGGGAUAAACACCCUUCAUAUAUUUCCUCUCACCCCCAACUGCAAGGAAAACAGUAACACUAAUUAGUUGUAACAGGGUGUUCAUUUCACACAGG__UCUCAGCAGGCCGCCCU
..(((..(((((.((((((((.......((((((..((........))..))))))...((.(((((....)).))).)))))))))).)))))..............((.....))))) (-26.64 = -26.20 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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