Structure #15349
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr1 |
Strand | - |
Position | 119,219,689 - 119,219,805 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 90.78 |
Columns | 120 |
Mean single MFE | -33.78 |
Consensus MFE | -27.52 |
Combinations/base pair | 47 / 40 = 1.18 |
SCI | 0.81 |
z-score | -2.81 |
RNA class probability | 0.969824 |
This structure is part of cluster 6258
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 90.78 Mean single sequence MFE: -33.77 Consensus MFE: -27.52 Energy contribution: -27.40 Covariance contribution: -0.12 Mean z-score: -2.81 Structure conservation index: 0.81 SVM decision value: 1.65 SVM RNA-class probability: 0.969824 Prediction: RNA ###################################################################### >hg17.chr1/119219805-119219689 AAGGUGUUGAGUAAAUAAGAAAUGGCAGCAAACAUUUCUUGUUAGUGAGGGAGAGAAUAAAAGGCAUGUCAGUCAGGGUUUCUGGGUGCAACUUUGGUUCAAUUAUCUUCAGAUGU .............(((((((((((........)))))))))))..((((((.((((((.((((...((.((.((((.....)))).)))).)))).))))..)).))))))..... ( -26.60) >mm5.chr3/61373938-61374058 AAGGUGUCGAGUAAAUAAGAAGUGGCAGCAACCAUUUCUUAUUAGCAAGGAAGAGAAUAAAAGGCAUGUCACUCAGAGGGUUUGAGUGAGUGCAACUUUGGUUCAAUUAUCUUCAGAUGU ...(..((..((.((((((((((((......)))))))))))).))...(((((((((.((((((((.(((((((((...)))))))))))))..)))).)))).....))))).))..) ( -38.90) >rn3.chr2/64276085-64276205 AAGGUGUCGAGUAAAUAAGAAGUGGCAGCGACCAUUUCUUAUUAGCAAGAGAGAGAAUAAAAGGCACGUCACUCAGAGGGCUUGAGUGAGUGCAACUUUGGUUCAAUUAUCUUCAGAUGU ((((((((..((.((((((((((((......)))))))))))).))..))....((((.((((((((.((((((((.....))))))))))))..)))).))))...))))))....... ( -39.10) >canFam1.chr17/58966304-58966188 AAGGUGUUGAGUAAAUAAGAAAUGGCAGCAAACAUUUCUUGUUAGUGAGGGAGAGAAUAAAAGGCAUGUCACUCAGGGUUUCUGGGUGCAACUUUGGUUCAAUUAUCUUCAGAUGU .............(((((((((((........)))))))))))..((((((.((((((.((((...((.(((((((.....))))))))).)))).))))..)).))))))..... ( -30.50) >consensus AAGGUGUCGAGUAAAUAAGAAAUGGCAGCAAACAUUUCUUAUUAGCAAGGGAGAGAAUAAAAGGCAUGUCACUCAG__GGUUUC__UGAGUGCAACUUUGGUUCAAUUAUCUUCAGAUGU ((((((((..(..(((((((((((........)))))))))))..)..))....((((.((((((((.((((((((.....))))))))))))..)))).))))...))))))....... (-27.52 = -27.40 + -0.12)