Structure #166

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr21
Strand	+
Position	15,807,295 - 15,807,414
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	85.63
Columns	120
Mean single MFE	-33.6
Consensus MFE	-26.9
Combinations/base pair	43 / 37 = 1.16
SCI	0.8
z-score	-1.64
RNA class probability	0.705926

This structure is part of cluster 63684

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  85.63
 Mean single sequence MFE: -33.60
 Consensus MFE: -26.90
 Energy contribution: -28.77
 Covariance contribution:   1.88
 Mean z-score:  -1.64
 Structure conservation index:   0.80
 SVM decision value:   0.36
 SVM RNA-class probability: 0.705926
 Prediction: RNA

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>hg17.chr21/15807295-15807414
UACUUCUGAUCAGAUAUGUAUCUGAAGCCGUUGAGUUUUUAUAUCAGGGAUUGUAUUAUUCUGGCCACCUGGGGAAAUAAGCAGCCAGGAAAAUCUGGCUUGGACUGGGACAAGACUAA
.....((((((((((....))))))(((......)))......))))(..((((.((((((.((((((((((............)))))......))))).))).))).))))..)... ( -25.80)
>canFam1.chr31/15350692-15350812
UACUGCUGAUCAGAUAUGCAUGUGAAGCCGCCAAACUUUUCAUAUCAAGAAUUGUAUUCUUCUGGCCACCUGGGGAAAUAAGCAGCCAGGAAAAUCUGGCUUGGGCUGGAAGAAGACUAA
............((((((.....((((........)))).)))))).......((.((((((..(((.((...))........((((((......))))))..)))..)))))).))... ( -32.00)
>mm5.chr16/77189053-77189172
UAUUUCUGAUCAGAUAUGUGUCUGAGGCAGCCAAGUUUUUAUAUCAGGGAUUGUGUUCUUCUGGCCACCUAGGGAAAUAUGGAGCCAGAAAAAUCUAGCUAAGGCUGGAAGAAGACUAA
.((..((((((((((....))))))((...))...........))))..)).((.((((((..(((.((...........))(((.(((....))).)))..)))..)))))).))... ( -37.40)
>rn3.chr11/15624373-15624492
UAUUUCUGAUCAGAUAUGUAUCUGAGGCAGCCAAGAUUUUAUAUCAGGGAUUGUGCUCUCCUGGCCACCUAGGGAAAUACAGAGCCAGAAAAAUCUGGCUUUGGCUGGAAGAAGACUAA
..(((((..((((((....))))))..((((((((((.....))).....(((((.(..(((((....)))))..).)))))(((((((....))))))))))))))..)))))..... ( -39.20)
>consensus
UACUUCUGAUCAGAUAUGUAUCUGAAGCAGCCAAGUUUUU_AUAUCAGGGAUUGUAUUCUUCUGGCCACCUAGGGAAAUAAGCAGCCAGAAAAAUCUGGCUUGGGCUGGAAGAAGACUAA
.((((((((((((((....))))))(((......))).......)))))))).((.((((((..(((.((...))........(((((((....)))))))..)))..)))))).))... (-26.90 = -28.77 +   1.88)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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