Structure #167

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr21
Strand	-
Position	15,807,295 - 15,807,414
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	85.63
Columns	120
Mean single MFE	-30.4
Consensus MFE	-22.9
Combinations/base pair	35 / 29 = 1.21
SCI	0.75
z-score	-2.24
RNA class probability	0.92394

This structure is part of cluster 63684

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  85.63
 Mean single sequence MFE: -30.41
 Consensus MFE: -22.90
 Energy contribution: -22.40
 Covariance contribution:  -0.50
 Mean z-score:  -2.24
 Structure conservation index:   0.75
 SVM decision value:   1.16
 SVM RNA-class probability: 0.923940
 Prediction: RNA

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>hg17.chr21/15807414-15807295
UUAGUCUUGUCCCAGUCCAAGCCAGAUUUUCCUGGCUGCUUAUUUCCCCAGGUGGCCAGAAUAAUACAAUCCCUGAUAUAAAAACUCAACGGCUUCAGAUACAUAUCUGAUCAGAAGUA
....(((............((((........(((((..(((........)))..)))))..............(((.........)))..))))((((((....))))))..))).... ( -24.60)
>canFam1.chr31/15350812-15350692
UUAGUCUUCUUCCAGCCCAAGCCAGAUUUUCCUGGCUGCUUAUUUCCCCAGGUGGCCAGAAGAAUACAAUUCUUGAUAUGAAAAGUUUGGCGGCUUCACAUGCAUAUCUGAUCAGCAGUA
.............((((...((((((((((.(((((..(((........)))..)))))((((((...)))))).......))))))))))))))..((.(((...........))))). ( -32.60)
>mm5.chr16/77189172-77189053
UUAGUCUUCUUCCAGCCUUAGCUAGAUUUUUCUGGCUCCAUAUUUCCCUAGGUGGCCAGAAGAACACAAUCCCUGAUAUAAAAACUUGGCUGCCUCAGACACAUAUCUGAUCAGAAAUA
...((.((((((..(((..(((((((....)))))))((...........)).)))..)))))).)).....((((...........((...))(((((......)))))))))..... ( -27.10)
>rn3.chr11/15624492-15624373
UUAGUCUUCUUCCAGCCAAAGCCAGAUUUUUCUGGCUCUGUAUUUCCCUAGGUGGCCAGGAGAGCACAAUCCCUGAUAUAAAAUCUUGGCUGCCUCAGAUACAUAUCUGAUCAGAAAUA
................((.(((((((....))))))).))((((((....((..(((((((.......(((...)))......)))))))..))((((((....))))))...)))))) ( -37.32)
>consensus
UUAGUCUUCUUCCAGCCCAAGCCAGAUUUUCCUGGCUCCUUAUUUCCCCAGGUGGCCAGAAGAACACAAUCCCUGAUAU_AAAAACUUGGCGGCCUCAGAUACAUAUCUGAUCAGAAAUA
...((.((((((..(((..((((((......))))))........((...)).)))..)))))).)).....((((...................((((((....))))))))))..... (-22.90 = -22.40 +  -0.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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