Structure #171

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr21
Strand	-
Position	15,807,374 - 15,807,467
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	89.61
Columns	93
Mean single MFE	-25.11
Consensus MFE	-21.2
Combinations/base pair	30 / 28 = 1.07
SCI	0.84
z-score	-3.22
RNA class probability	0.991665

This structure is part of cluster 63684

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 93
 Columns: 93
 Strand: +
 Mean pairwise identity:  89.61
 Mean single sequence MFE: -25.11
 Consensus MFE: -21.20
 Energy contribution: -22.07
 Covariance contribution:   0.87
 Mean z-score:  -3.22
 Structure conservation index:   0.84
 SVM decision value:   2.28
 SVM RNA-class probability: 0.991665
 Prediction: RNA

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>hg17.chr21/15807467-15807374
UAAUUCACGGAAGAGCAGAAUAUAUGAUGCUUUCAUAAAUAAGUAUUAGUGCAUUAGUCUUGUCCCAGUCCAAGCCAGAUUUUCCUGGCUGCU
........(((.(..((((.....((((((((........)))))))).........)).))..)...))).((((((......))))))... ( -20.84)
>canFam1.chr31/15350865-15350772
UAGUUCCUGGAAGAGCAGAAUAUAUGAUGCUUUCAUAAAUAAAUAUUAGUACAUUAGUCUUCUUCCAGCCCAAGCCAGAUUUUCCUGGCUGCU
......((((((((..(((....(((.((((...(((......))).)))))))...)))))))))))....((((((......))))))... ( -25.10)
>mm5.chr16/77189225-77189132
UAAUUCCUGGAAGAACAGAAUAUAUGAUGCUUUCAUAAAUAAAUAUUAGUGCAUUAGUCUUCUUCCAGCCUUAGCUAGAUUUUUCUGGCUCCA
......((((((((..(((.....((((((.((.(((......))).)).)))))).)))))))))))....(((((((....)))))))... ( -25.90)
>rn3.chr11/15624545-15624452
UAAUUCCUGGAAGAACAGAAUAUAUGGUGCUUUCAUAAAUAAAUAUUAGUGCAUUAGUCUUCUUCCAGCCAAAGCCAGAUUUUUCUGGCUCUG
......((((((((..(((.....((((((.((.(((......))).)).)))))).))))))))))).((.(((((((....))))))).)) ( -28.60)
>consensus
UAAUUCCUGGAAGAACAGAAUAUAUGAUGCUUUCAUAAAUAAAUAUUAGUGCAUUAGUCUUCUUCCAGCCCAAGCCAGAUUUUCCUGGCUCCU
......((((((((..(((.....((((((.((.(((......))).)).)))))).)))))))))))....((((((......))))))... (-21.20 = -22.07 +   0.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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