Structure #17191
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | - |
| Position | 157,924,073 - 157,924,202 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 84 |
| Columns | 130 |
| Mean single MFE | -61.65 |
| Consensus MFE | -55.04 |
| Combinations/base pair | 49 / 40 = 1.23 |
| SCI | 0.89 |
| z-score | -2.01 |
| RNA class probability | 0.946814 |
This structure is part of cluster 7144
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 130 Columns: 130 Strand: + Mean pairwise identity: 84.00 Mean single sequence MFE: -61.65 Consensus MFE: -55.04 Energy contribution: -55.60 Covariance contribution: 0.56 Mean z-score: -2.01 Structure conservation index: 0.89 SVM decision value: 1.35 SVM RNA-class probability: 0.946814 Prediction: RNA ###################################################################### >hg17.chr1/157924202-157924073 GGCGUUGGUUGAAAAUCACCCCCGGUUUUGGCCGUGGCCGCGGGUGAAAUUCGGCGCGCAAGAGCCUCCGGGGGCCUCAGCUCACCGCGUGCUGCCGCCAUGUGCGACGGUGAAACCCAGGCCCCGACA (((....((((((..((((((.(((((........))))).))))))..)))))).(....).)))....(((((((....((((((((..(.........)..)).)))))).....))))))).... ( -60.40) >canFam1.chr6/40576020-40575893 GGCGUUGGUUGAAAAUCACCUGCGGCCCUGCCCGUGGCCGCGGGUGAGAUUCGGCGCCCAGAGCCACCGGGGGCCUCAGCUCACCGCCCACUGGUCCUUGUGGAGAGGUGAAACCCAGGCCCCGACA (((.(((((((((..(((((((((((((.....).))))))))))))..)))))...)))).)))....(((((((....(((((.(((((........)))).).))))).....))))))).... ( -67.60) >mm5.chr17/23317247-23317119 GGCGUUCGUUGAAAAUCACCCUCGGCUUUGGCUUGUAGCCGGGGGUGAGAUUCGGCGCCCAGAGCCACAGAGGCCUCAGCUCACCGCCCGCUGCCCCGGUGUGGGAGGGUGAAACCCAGGCCCCUACA (((...(((((((..((((((((((((.........))))))))))))..)))))))......)))..((.(((((....(((((.(((((.((....)))))))..))))).....))))).))... ( -63.90) >rn3.chr10/13975049-13974921 GGCGUUCGUUGAAAAUCAUCCUCGGCUUUGGCCUGUGGCCGGGGUUGAGAAUCGGCGCCCAGAGCCACAGAGGCCUCAGCUCACCCCCUGCUGCCCCAGUGUGGGAGGGUGAAACCCAGGCCCCUACA (((...((((((...(((.((((((((.........)))))))).)))...))))))......)))..((.(((((....((((((((..(.........)..)).)))))).....))))).))... ( -54.70) >consensus GGCGUUCGUUGAAAAUCACCCUCGGCUUUGGCC_GUGGCCGCGGGUGAGAUUCGGCGCCCA_GAGCC_ACAGAGGCCUCAGCUCACCGCCCGCUGCCCCAGUGUGGGAGGGUGAAACCCAGGCCCCGACA (((...(((((((..((((((((((((.........))))))))))))..))))))).......)))....(((((((....(((((((((((.........))))).)))))).....))))))).... (-55.04 = -55.60 + 0.56)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
