Structure #19676
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr1 |
Strand | + |
Position | 189,758,070 - 189,758,202 |
Number of sequences | 4 |
Organisms | human, dog, mouse, rat |
Mean pairwise identity | 87.12 |
Columns | 132 |
Mean single MFE | -34.05 |
Consensus MFE | -28.8 |
Combinations/base pair | 36 / 31 = 1.16 |
SCI | 0.85 |
z-score | -1.42 |
RNA class probability | 0.57338 |
This structure is part of cluster 8537
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 132 Columns: 132 Strand: + Mean pairwise identity: 87.12 Mean single sequence MFE: -34.05 Consensus MFE: -28.80 Energy contribution: -29.55 Covariance contribution: 0.75 Mean z-score: -1.42 Structure conservation index: 0.85 SVM decision value: 0.08 SVM RNA-class probability: 0.573380 Prediction: RNA ###################################################################### >hg17.chr1/189758070-189758202 UGUAGGAGUAAUAUACUACCACUCAACCUCUACUGUAAGGUUGGCAGCCCUGAGAACUCCUUUUUUAAUUUAGCGUGUUAUGGAUGUAUUUCUGCUCCCAAAGGAAUGAAGAGCAGACAUUACCACAUGCAA ...((((((.............(((((((........)))))))((....))...))))))...........((((((....((((....(((((((.((......))..)))))))))))...)))))).. ( -32.60) >canFam1.chr??/131-0 UGUAGGAGAAAUAUACUACUACUCAACCUCUACUGUAAGGCUGGUAGCCCUGAGAACUCCUUUUUUAAUGUAGCAUGUAAUGGAUGUAUUCUUGCUCCCCAAAGAAUGAGGAGCAGACUUUUCCACAUGCA ...(((((..........((((.((.(((........))).)))))).........)))))...........((((((...(((.....(((.(((((.((.....)).))))))))....))))))))). ( -33.81) >mm5.chr1/51524722-51524590 UGUAGGAGAAAUAUACUACUACUCAACCUCUACUGUAAGGUUGGCAGCCCUGAGAACUCCUCUUUUAGUGUAGCAUGUUCUGGAUGCAUUCCUGCUCCAAAUAGAAUGAGGAGAAGGUAUUUCCACAUGCAA (((((..(((((((........(((((((........)))))))............(((((((((((.((.((((......(((.....))))))).))..))))).))))))...)))))))..).)))). ( -33.70) >rn3.chr13/53727376-53727244 UGUAGGAGAAAUAUACUACCACCCAACCUCUACUAGAAGGCUGGCAGCCCUGAGAACUCCUCUUUUAGUGUAGCAUGUUCUGGAUACAUUCCUACUCCAAAGAGAAUGGGGAGAAGGUAUUUCCACAUGCAA (((((..(((((((.((.(..((((..((((((((((((((.....)))..(((.....))))))))))((((.((((.......))))..)))).....))))..))))..).)))))))))..).)))). ( -36.10) >consensus UGUAGGAGAAAUAUACUACCACUCAACCUCUACUGUAAGGCUGGCAGCCCUGAGAACUCCUCUUUUAAUGUAGCAUGUUAUGGAUGCAUUCCUGCUCCAAAAAGAAUGAGGAGAAGACAUUUCCACAUGCAA ...(((((..............(((((((........)))))))((....))....)))))...........((((((...(((......((((((((...........))))))))....))))))))).. (-28.80 = -29.55 + 0.75)