Structure #19678
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | - |
| Position | 189,758,070 - 189,758,202 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 87.12 |
| Columns | 132 |
| Mean single MFE | -42.66 |
| Consensus MFE | -39.17 |
| Combinations/base pair | 40 / 34 = 1.18 |
| SCI | 0.92 |
| z-score | -3.4 |
| RNA class probability | 0.998486 |
This structure is part of cluster 8537
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 132 Columns: 132 Strand: + Mean pairwise identity: 87.12 Mean single sequence MFE: -42.66 Consensus MFE: -39.17 Energy contribution: -39.11 Covariance contribution: -0.06 Mean z-score: -3.40 Structure conservation index: 0.92 SVM decision value: 3.12 SVM RNA-class probability: 0.998486 Prediction: RNA ###################################################################### >hg17.chr1/189758202-189758070 UUGCAUGUGGUAAUGUCUGCUCUUCAUUCCUUUGGGAGCAGAAAUACAUCCAUAACACGCUAAAUUAAAAAAGGAGUUCUCAGGGCUGCCAACCUUACAGUAGAGGUUGAGUGGUAGUAUAUUACUCCUACA .....(((((.....((((((((.((......)))))))))).......))))).................((((((.......((..((((((((......))))))).)..))........))))))... ( -40.86) >canFam1.chr??/0-131 UGCAUGUGGAAAAGUCUGCUCCUCAUUCUUUGGGGAGCAAGAAUACAUCCAUUACAUGCUACAUUAAAAAAGGAGUUCUCAGGGCUACCAGCCUUACAGUAGAGGUUGAGUAGUAGUAUAUUUCUCCUACA .(((((((((....(((((((((((.....)))))))).))).....)))...))))))...........(((((........((((((((((((......))))))).))))).........)))))... ( -48.63) >mm5.chr1/51524590-51524722 UUGCAUGUGGAAAUACCUUCUCCUCAUUCUAUUUGGAGCAGGAAUGCAUCCAGAACAUGCUACACUAAAAGAGGAGUUCUCAGGGCUGCCAACCUUACAGUAGAGGUUGAGUAGUAGUAUAUUUCUCCUACA ..(((((((((.((.(((.((((...........)))).))).))...)))...))))))...........(((((........((((((((((((......))))))).))))).........)))))... ( -41.23) >rn3.chr13/53727244-53727376 UUGCAUGUGGAAAUACCUUCUCCCCAUUCUCUUUGGAGUAGGAAUGUAUCCAGAACAUGCUACACUAAAAGAGGAGUUCUCAGGGCUGCCAGCCUUCUAGUAGAGGUUGGGUGGUAGUAUAUUUCUCCUACA ..(((((((((.((((((.((((...........)))).)))..))).)))...))))))...........(((((........(((((((.((.(((.....)))..)).)))))))......)))))... ( -39.94) >consensus UUGCAUGUGGAAAUACCUGCUCCUCAUUCUUUUGGGAGCAGGAAUACAUCCAGAACAUGCUACACUAAAAAAGGAGUUCUCAGGGCUGCCAACCUUACAGUAGAGGUUGAGUAGUAGUAUAUUUCUCCUACA ..(((((((((....((((((((...........))))))))......)))...))))))...........(((((........((((((((((((......))))))).))))).........)))))... (-39.17 = -39.11 + -0.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
