Structure #22423
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | + |
| Position | 216,679,607 - 216,679,686 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 84.79 |
| Columns | 80 |
| Mean single MFE | -25.25 |
| Consensus MFE | -20.75 |
| Combinations/base pair | 20 / 19 = 1.05 |
| SCI | 0.82 |
| z-score | -5.06 |
| RNA class probability | 0.999248 |
This structure is part of cluster 10044
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 80 Columns: 80 Strand: + Mean pairwise identity: 84.79 Mean single sequence MFE: -25.25 Consensus MFE: -20.75 Energy contribution: -20.99 Covariance contribution: 0.24 Mean z-score: -5.06 Structure conservation index: 0.82 SVM decision value: 3.46 SVM RNA-class probability: 0.999248 Prediction: RNA ###################################################################### >hg17.chr1/216679607-216679686 ACAGAAUAUUGGCCUAAAGAAAUGACAGACAAACUCAGCUAUAUUGUCUGUCAAUUCAUAGGUCAUUUUCCUGUAUACC ((((.....(((((((..(((.((((((((((...........)))))))))).))).))))))).....))))..... ( -27.50) >mm5.chr1/10252127-10252049 ACAGAAUAUUGGCCUACAGAAUGACAGACAUACACAGCUGCACGGUCUGUCAAAUCAUAGGUCAUUCUCCUGUACACC ((((.....(((((((.....((((((((...((....))....)))))))).....))))))).....))))..... ( -23.60) >rn3.chr13/9847228-9847150 ACAGAAUAUUGGCCUACAGAAUGACAGACACACGCAGCCACACUGUCUGUCAAAUCAUAGGUCAUUGUCCUGUACACC ((((.(((.(((((((.....(((((((((.............))))))))).....))))))).))).))))..... ( -26.62) >canFam1.chr38/17893237-17893316 ACAGAAUAUUGGCCUACAAAAAUGACAGACAAACUUAGCCAAAUUGUCUAUCAAUUCGUAGGUCAUUUUCCUGUACACC ((((.....((((((((.....(((.((((((...........)))))).)))....)))))))).....))))..... ( -21.70) >galGal2.chr3/93503602-93503524 ACAGAAUAUUGGCCUAUAGAAAUGACAGGCACAUUUUGAAAGCAGUCUGUCAAUUCAUAGGUCAUUUUCCUGGACACC .(((.....((((((((.(((.((((((((..............)))))))).))))))))))).....)))...... ( -26.84) >consensus ACAGAAUAUUGGCCUACAGAAAUGACAGACAAACUCAG_CCAAACUGUCUGUCAAUUCAUAGGUCAUUUUCCUGUACACC ((((.....(((((((......((((((((................)))))))).....))))))).....))))..... (-20.75 = -20.99 + 0.24)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
