Structure #23822
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr10 |
| Strand | + |
| Position | 8,616,167 - 8,616,287 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 83.42 |
| Columns | 120 |
| Mean single MFE | -29.18 |
| Consensus MFE | -19.56 |
| Combinations/base pair | 45 / 36 = 1.25 |
| SCI | 0.67 |
| z-score | -2.61 |
| RNA class probability | 0.953591 |
This structure is part of cluster 10861
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.42 Mean single sequence MFE: -29.18 Consensus MFE: -19.56 Energy contribution: -21.12 Covariance contribution: 1.56 Mean z-score: -2.61 Structure conservation index: 0.67 SVM decision value: 1.42 SVM RNA-class probability: 0.953591 Prediction: RNA ###################################################################### >hg17.chr10/8616167-8616287 UAAUAAAUCUCGUCCCUAAUCCUCAGAAAGAACCUGAAGAAGAGAUUCACUUUCUAUAUUAGGUUUCACUUACUGAAAGGCUUCUGAAGAUAAAGCCCAUAAACUAUGAAGGGACAGAUA ......((((.((((((.....((((.((((((((((.(.(((((.....))))).).)))))))...))).))))..(((((.........)))))............)))))))))). ( -31.80) >canFam1.chr2/59457983-59457863 UAAUAAAUCUCGUCCCUAAUCCUUGGAGAGAACCUAGAGCAGAGAUUCACUUUCUGUAUCAGGUUUCAUUUACUGAAAGGCUUCUGAAGAUAAAGCUCAUAAACUAUGAAGGGACAGAUA ......((((.((((((.(((.(..(((.((((((.(((((((((.....))))))).))))))))......((....)).)))..).))).....(((((...))))))))))))))). ( -33.00) >mm5.chr2/172325986-172325866 UAAUAAAUCUUGUCCCUAAUCCUCAGAGAGGACCUAAAGAAGAGAUUUGCUUUCUGUAUCGGCUUUCAUUUACUGAAAGGCUUCUGAAGAUAAAGCUCAUAAACUAUGGAGGGACAGAUA ......((((.((((((..(((((...))))).........(((.((((.((((.(....(.((((((.....)))))).)..).)))).)))).)))...........)))))))))). ( -31.30) >rn3.chr17/80557472-80557592 UAAUAAAUCUUGUCCCUAAUCCUCAGAGAGGACCUAAAGAAGAGAUUCACUUUCUGUAUCAGGUUUCAUUUACUGAAAGGCUUCUGAAGAUAAAGCUCAUAAACUAUGGAGGGACAGAUA ......((((.((((((.(((.((((((((.((((.....(((((.....))))).....))))))).....((....))..))))).))).....(((((...))))))))))))))). ( -30.20) >galGal2.chr1/182525535-182525419 AAAUCCAUCCUUCUUUUAAUCCUUAGAAGGGACUUGUAGAAAAGAUUUUCUAUAUUGAGUUUCUCUCACUGAAAGGAUUCCAAAGAUAAAACUCAUAAAAUAUGCAAGCACAGACA ...........(((((.((((((((((.(..(((((((((((....)))))))...))))..))))......)))))))..))))).............................. ( -19.60) >consensus UAAUAAAUCUUGUCCCUAAUCCUCAGAGAGGACCUAAAGAAGAGAUUCACUUUCUGUAUCAGGUUUCAUUUACUGAAAGGCUUCUGAAGAUAAAGCUCAUAAACUAUGAAGGGACAGAUA ......((((.((((((.(((.((((((.((((((.....(((((.....))))).....))))))......((....)).)))))).)))......((((...)))).)))))))))). (-19.56 = -21.12 + 1.56)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
