Structure #23829
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr10 |
| Strand | + |
| Position | 8,616,247 - 8,616,367 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 87 |
| Columns | 120 |
| Mean single MFE | -30.61 |
| Consensus MFE | -23.06 |
| Combinations/base pair | 39 / 36 = 1.08 |
| SCI | 0.75 |
| z-score | -1.75 |
| RNA class probability | 0.698718 |
This structure is part of cluster 10861
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 87.00 Mean single sequence MFE: -30.61 Consensus MFE: -23.06 Energy contribution: -24.46 Covariance contribution: 1.40 Mean z-score: -1.75 Structure conservation index: 0.75 SVM decision value: 0.35 SVM RNA-class probability: 0.698718 Prediction: RNA ###################################################################### >hg17.chr10/8616247-8616367 CUUCUGAAGAUAAAGCCCAUAAACUAUGAAGGGACAGAUACAAUGUGGGCUACGGGGUUAAAGGGCUACAGAAAGCUCCGUAAUUCUCAGAAAUGGGAAACAGAUGUUGUUUGACAUUUU .((((((..((...(((((((.....((......)).......)))))))(((((((((....(....)....)))))))))))..))))))...(....)(((((((....))))))). ( -33.50) >canFam1.chr2/59458063-59457943 CUUCUGAAGAUAAAGCUCAUAAACUAUGAAGGGACAGAUACAAUGUGGGCUACGGGGUUACAGGGCUGGAGAAAGCUCUGUAAUUCUCAGAAAUGGGAAACAGAUGUUGUUUGACAUUUU .((((((......((((((((.....((......)).......))))))))...(((((((((((((......)))))))))))))))))))...(....)(((((((....))))))). ( -37.40) >mm5.chr2/172326066-172325946 CUUCUGAAGAUAAAGCUCAUAAACUAUGGAGGGACAGAUACAAUGUGGGCUAAAGGGUUAAAGGGCCAGAGGCAGCUCUGUAAUUCUCAGAAAUGGGCAGCAGAUGUUGUUUGACAUUUU .((((((......((((((((.....((......)).......))))))))...((((((.(((((........))))).)))))))))))).(..(((((....)))))..)....... ( -31.20) >rn3.chr17/80557552-80557672 CUUCUGAAGAUAAAGCUCAUAAACUAUGGAGGGACAGAUACAAUGUGGGCUAAAGGGUUAAAGGGCUAGAGACAGCUCUGUAAUUCUCAGAAAUGGGAAACAGAUGUUGUUUGACAUUUU .((((((......((((((((.....((......)).......))))))))...((((((.((((((......)))))).))))))))))))...(....)(((((((....))))))). ( -31.80) >galGal2.chr1/182525615-182525495 AUUCCAAAGAUAAAACUCAUAAAAUAUGCAAGCACAGACACACUGAGGGUGAAAGGGUUAAGGGACUGAAGAAGACUCACUAAUUCUCACAAAUGGGGACCAGAUGUUUCUUGACAUUUU .(((((.........((((.......((......)).......)))).((((..((((((.(((.((.....)).)))..))))))))))...)))))...(((((((....))))))). ( -19.14) >consensus CUUCUGAAGAUAAAGCUCAUAAACUAUGAAGGGACAGAUACAAUGUGGGCUAAAGGGUUAAAGGGCUAGAGAAAGCUCUGUAAUUCUCAGAAAUGGGAAACAGAUGUUGUUUGACAUUUU .((((((......((((((((.....((......)).......))))))))...((((((.((((((......)))))).))))))))))))...(....)(((((((....))))))). (-23.06 = -24.46 + 1.40)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
