Structure #24994

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	-
Position	33,451,076 - 33,451,194
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.18
Columns	120
Mean single MFE	-34.23
Consensus MFE	-21.35
Combinations/base pair	45 / 35 = 1.29
SCI	0.62
z-score	-2.27
RNA class probability	0.96037

This structure is part of cluster 11553

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.18
 Mean single sequence MFE: -34.23
 Consensus MFE: -21.35
 Energy contribution: -25.85
 Covariance contribution:   4.50
 Mean z-score:  -2.27
 Structure conservation index:   0.62
 SVM decision value:   1.50
 SVM RNA-class probability: 0.960370
 Prediction: RNA

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>hg17.chr10/33451194-33451076
AGGGUUGAGCAAACACAGUUGUUUAAUGCGGCUGCAUUUGCCCACAGUGUCAGCAUGCUUCUGCAUUAGAAUGUAUUACACUCGGCCACGCUGGCGCUUUCUCCAUCUGUUUACAUUU
.(((.((.(((((..(((((((.....)))))))..))))).)).(((((((((((((....))))..((.((.....)).))......)))))))))...))).............. ( -35.10)
>mm5.chr8/722690-722805
AGGGCUGAGCAAGCACUACUGUUUAAUACAGCUAUGCUUACCCAGCCAGCACCAGAGUAUUACUACAGUGGAAUGUAUUACAUGCAGCUGGCACUUUGUCCAUCUGUUUACAUUU
.((((.(((.(((((...((((.....))))...))))).....((((((.(((..(((....)))..)))..(((((...))))))))))).))).)))).............. ( -34.20)
>rn3.chr19/687700-687815
AGGGCUGAGCAAGCACUACUGUUUAAUACAGCUAUGCUUACCCAGCCAGCACCAGAAUAUUACUGUAGUGGAAUGUAGUACAUGCAGCUGGCACUGUGUCCAUCUGUUUACAUUU
.(((.(((((((((.....(((.....)))))).))))))))).((((((.(((..(((....)))..)))..((((.....))))))))))..((((..(....)..))))... ( -33.50)
>canFam1.chr2/81130651-81130770
AGGGCUGAGCAAACACAGUGUUUAAUGCAGCUACAUUUGCCCCACCAGUGUCAGCAUGUUACUGCAUUAGAAUAUAUUAUGCUCGGCCAUGCUGGCGCUUUCUCCAUCUGUUUACAUUU
..(((((((((.........((((((((((..(((..(((..((....))...))))))..))))))))))........)))))))))....(((........)))............. ( -34.13)
>consensus
AGGGCUGAGCAAACACAACUGUUUAAUACAGCUACACUUACCCAGCCAGCACCAGAAUAUUACUGCAGUAGAAUGUAUUACACGCAGC_____UGGCACUUUCUCCAUCUGUUUACAUUU
..(((((.(((((((.((((((.....)))))).))))))).)))))(((((((((.(((....)))...(((((.....)))))......))))))))).................... (-21.35 = -25.85 +   4.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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