Structure #24997

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	+
Position	33,451,116 - 33,451,199
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.22
Columns	85
Mean single MFE	-27.58
Consensus MFE	-25.2
Combinations/base pair	30 / 22 = 1.36
SCI	0.91
z-score	-3.93
RNA class probability	0.999749

This structure is part of cluster 11553

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 85
 Columns: 85
 Strand: +
 Mean pairwise identity:  79.22
 Mean single sequence MFE: -27.58
 Consensus MFE: -25.20
 Energy contribution: -25.20
 Covariance contribution:  -0.00
 Mean z-score:  -3.93
 Structure conservation index:   0.91
 SVM decision value:   4.00
 SVM RNA-class probability: 0.999749
 Prediction: RNA

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>hg17.chr10/33451116-33451199
UAAUACAUUCUAAUGCAGAAGCAUGCUGACACUGUGGGCAAAUGCAGCCGCAUUAAACAACUGUGUUUGCUCAACCCUUUCCA
........((..((((....))))...)).....(((((((((((((.............))))))))))))).......... ( -19.52)
>mm5.chr8/722810-722725
UAAUACAUUCCACUGUAGUAAUACUCUGGUGCUGGCUGGGUAAGCAUAGCUGUAUUAAACAGUAGUGCUUGCUCAGCCCUUUCCA
.........(((..(((....)))..)))....((((((((((((((.(((((.....))))).))))))))))))))....... ( -36.50)
>rn3.chr19/687820-687735
UACUACAUUCCACUACAGUAAUAUUCUGGUGCUGGCUGGGUAAGCAUAGCUGUAUUAAACAGUAGUGCUUGCUCAGCCCUUUCCA
...........................((....((((((((((((((.(((((.....))))).))))))))))))))....)). ( -33.40)
>canFam1.chr2/81130775-81130691
UAAUAUAUUCUAAUGCAGUAACAUGCUGACACUGGUGGGGCAAAUGUAGCUGCAUUAAACACUGUGUUUGCUCAGCCCUUUCCA
.............((((((.....)))).))..(((.(((((((..(((.((.......)))))..))))))).)))....... ( -20.90)
>consensus
UAAUACAUUCCAAUGCAGUAACAUGCUGACACUGGCUGGGCAAACAUAGCUGCAUUAAACAGCAGUGCUUGCUCAGCCCUUUCCA
...............(((.......))).....(((((((((((((((((((.......)))))))))))))))))))....... (-25.20 = -25.20 +  -0.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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