Structure #25705

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	-
Position	49,624,107 - 49,624,203
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.54
Columns	98
Mean single MFE	-49.47
Consensus MFE	-38.85
Combinations/base pair	40 / 30 = 1.33
SCI	0.79
z-score	-2.68
RNA class probability	0.994003

This structure is part of cluster 11959

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 98
 Columns: 98
 Strand: +
 Mean pairwise identity:  81.54
 Mean single sequence MFE: -49.48
 Consensus MFE: -38.85
 Energy contribution: -38.84
 Covariance contribution:  -0.00
 Mean z-score:  -2.68
 Structure conservation index:   0.79
 SVM decision value:   2.44
 SVM RNA-class probability: 0.994003
 Prediction: RNA

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>hg17.chr10/49624203-49624107
UUUCCCAGGCCGCUGCCGCAGGUAGCGGAGGGGCAGGUCCCAGUGCUGGAGACCGAGGCUACCUCCUGGGCCACCUGGCGGCCGUUGUGGUGAAGC
(((((((((((((((((...))))))((((((((.(((((((....))).))))...))).)))))...(((....)))))))....))).)))). ( -48.60)
>canFam1.chr2/556-653
UUUCCCAGGCAGCUGCCAAAGAUGGCGGAGGGGCAGGUCCUGGUGCUCAGUGGCCGAGGCCAUCUCCUGGGCUGCCUGGCAGCCACUGUAGCCAAAC
....((((((((((((((....))))((((((((.(((((((.....))).))))...))).)))))..)))))))))).................. ( -47.70)
>mm5.chr11/86232727-86232630
UUUCCCAGGCGGCUGCCGAAGAUGGAGAAGGGGCAGGUUCUGGUAUUGGAUGGCCGAGGCCAUCUUCUUGGCCGCCUGGCGGCCAUUGUGGCCAAGC
....((((((((((...((((((((......(((..((((.......)))).)))....))))))))..)))))))))).((((.....)))).... ( -48.60)
>rn3.chr20/41148868-41148770
UUUCCUAGGCGGCUGCCGAAGAUGGCGGAGGGGCAGGUUCUAGUAUUGGAUGGCCCGGGGCCAUCUUCUGGGCCGCCUGGCGGCCAUUGUGGCCAAGC
....((((((((((.(.(((((((((....((((..((((.......)))).))))...))))))))).))))))))))).((((.....)))).... ( -53.00)
>consensus
UUUCCCAGGCGGCUGCCGAAGAUGGCGGAGGGGCAGGUCCUAGUACUGGAU_GGCCGAGGCCAUCUCCUGGGCCGCCUGGCGGCCAUUGUGGCCAAGC
....((((((((((((((....))))((((((((.((((.............))))...))).)))))..)))))))))).((((.....)))).... (-38.85 = -38.84 +  -0.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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