Structure #2774

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr22
Strand	+
Position	36,525,037 - 36,525,150
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.34
Columns	115
Mean single MFE	-50.65
Consensus MFE	-40.1
Combinations/base pair	46 / 33 = 1.39
SCI	0.79
z-score	-4.18
RNA class probability	0.999622

This structure is part of cluster 65190

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 115
 Columns: 115
 Strand: +
 Mean pairwise identity:  81.34
 Mean single sequence MFE: -50.65
 Consensus MFE: -40.10
 Energy contribution: -38.60
 Covariance contribution:  -1.50
 Mean z-score:  -4.18
 Structure conservation index:   0.79
 SVM decision value:   3.80
 SVM RNA-class probability: 0.999622
 Prediction: RNA

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>hg17.chr22/36525037-36525150
GAGGUCGGGGGGCGCGCUGGGGGAGAGACGGCAGAGGAGGGGGAAGGGACAAAGUUUGAAAGUACCCUUCCAACUCUUUCAGGGAAAGUUUCCUUGGGGGCCCCAUGGACAGA
...(((.((((((.(((((.........)))).((((((..(((((((((...........)).)))))))..))))))((((((.....)))))).).))))).).)))... ( -49.80)
>canFam1.chr10/42709894-42709781
GGGGUCGGGGGGCAGGCUGGGGGAGAGCCUGCCGAGGAGGGGGAAGGGACGAAGUUUGAAAGUGCCCUUCCAACUCUUCCAGGGAAAGUUUGCUCAGGGGCCCCAAGGACAGA
((((((.(((((((((((.......))))))))((((((..(((((((((...........)).)))))))..)))))).............)))...))))))......... ( -54.70)
>mm5.chr15/79354303-79354418
GAGGUCCGGGGGUGCAUCGAGGGGAGAAGGCGACUCAAGAGGGGGAAGGGACAAAGUUUGAAAGUGCCCUUCCAACUCUUUCAGGGAAAGUUUCCUUGAGGGCCUCGCAGGCAGA
(((((((..((((((.((.....))....)).))))(((((..(((((((((...........)).)))))))..)))))(((((((.....))))))))))))))......... ( -47.60)
>rn3.chr7/117034724-117034838
GAGGUCCGGGGGUGCAUCGAGGGGAGAGGAGACUCAAGAGGGGGAAGGGACAAAGUUUGAAAGUGCCCUUCCAACUCUUCCUGGGAAAGUUUCCUUGAGGUCCCCGCAGGCAAA
...(((.(.(((..(.((((((..((((....)))(((((..(((((((((...........)).)))))))..)))))..........)..)))))).)..))).).)))... ( -50.50)
>consensus
GAGGUCCGGGGGCGCACC__GGGGGAGAGGCGACUCAAGAGGGGGAAGGGACAAAGUUUGAAAGUGCCCUUCCAACUCUUCCAGGGAAAGUUUCCUUGAGGGCCCCACAGACAGA
...(((..(((((.(.((..(((((((........((((((..(((((((((...........)).)))))))..)))))).........)))))))))).)))))...)))... (-40.10 = -38.60 +  -1.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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