Structure #2777

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr22
Strand	-
Position	36,525,037 - 36,525,150
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.34
Columns	115
Mean single MFE	-35.78
Consensus MFE	-23.31
Combinations/base pair	28 / 27 = 1.04
SCI	0.65
z-score	-2.75
RNA class probability	0.986581

This structure is part of cluster 65190

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 115
 Columns: 115
 Strand: +
 Mean pairwise identity:  81.34
 Mean single sequence MFE: -35.78
 Consensus MFE: -23.31
 Energy contribution: -25.88
 Covariance contribution:   2.56
 Mean z-score:  -2.75
 Structure conservation index:   0.65
 SVM decision value:   2.05
 SVM RNA-class probability: 0.986581
 Prediction: RNA

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>hg17.chr22/36525150-36525037
UCUGUCCAUGGGGCCCCCAAGGAAACUUUCCCUGAAAGAGUUGGAAGGGUACUUUCAAACUUUGUCCCUUCCCCCUCCUCUGCCGUCUCUCCCCCAGCGCGCCCCCCGACCUC
...(((...(((((....(((....))).....((.((((..(((((((.((...........))))))))).....))))....)).............)))))..)))... ( -31.10)
>canFam1.chr10/42709781-42709894
UCUGUCCUUGGGGCCCCUGAGCAAACUUUCCCUGGAAGAGUUGGAAGGGCACUUUCAAACUUCGUCCCUUCCCCCUCCUCGGCAGGCUCUCCCCCAGCCUGCCCCCCGACCCC
.......((((((.....(((......(((....)))(((..(((((((.((...........)))))))))..))))))((((((((.......)))))))))))))).... ( -41.90)
>mm5.chr15/79354418-79354303
UCUGCCUGCGAGGCCCUCAAGGAAACUUUCCCUGAAAGAGUUGGAAGGGCACUUUCAAACUUUGUCCCUUCCCCCUCUUGAGUCGCCUUCUCCCCUCGAUGCACCCCCGGACCUC
..(((...(((((.....((((..((((.......(((((..(((((((.((...........)))))))))..)))))))))..))))....)))))..)))............ ( -34.31)
>rn3.chr7/117034838-117034724
UUUGCCUGCGGGGACCUCAAGGAAACUUUCCCAGGAAGAGUUGGAAGGGCACUUUCAAACUUUGUCCCUUCCCCCUCUUGAGUCUCCUCUCCCCUCGAUGCACCCCCGGACCUC
.....(((.((((.....(((....)))..(.((((((((..(((((((.((...........)))))))))..)))))(((......))).))).).....)))))))..... ( -35.80)
>consensus
UCUGCCCGCGGGGCCCCCAAGGAAACUUUCCCUGAAAGAGUUGGAAGGGCACUUUCAAACUUUGUCCCUUCCCCCUCCUCAGCCGCCUCUCCCCC__AACGCACCCCCCGACCUC
...(((((.(((((....(((....))).......(((((..(((((((.((...........)))))))))..))))).......................))))))))))... (-23.31 = -25.88 +   2.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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