Structure #2781

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr22
Strand	-
Position	36,525,075 - 36,525,181
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	83.64
Columns	108
Mean single MFE	-29.22
Consensus MFE	-21.92
Combinations/base pair	25 / 21 = 1.19
SCI	0.75
z-score	-2.1
RNA class probability	0.909878

This structure is part of cluster 65190

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 108
 Columns: 108
 Strand: +
 Mean pairwise identity:  83.64
 Mean single sequence MFE: -29.23
 Consensus MFE: -21.92
 Energy contribution: -21.98
 Covariance contribution:   0.06
 Mean z-score:  -2.10
 Structure conservation index:   0.75
 SVM decision value:   1.07
 SVM RNA-class probability: 0.909878
 Prediction: RNA

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>hg17.chr22/36525181-36525075
CCGCCACCGGUCCCUCCACACCUCUACCCCCUCUGUCCAUGGGGCCCCCAAGGAAACUUUCCCUGAAAGAGUUGGAAGGGUACUUUCAAACUUUGUCCCUUCCCCC
(((....)))...........((((..((((.........))))....((.(((.....))).))..))))..(((((((.((...........)))))))))... ( -26.10)
>canFam1.chr10/42709819-42709927
CCACCACCGGGCCCCUCGCACCCCUGCCUCUUCUCUGUCCUUGGGGCCCCUGAGCAAACUUUCCCUGGAAGAGUUGGAAGGGCACUUUCAAACUUCGUCCCUUCCCCC
........(((((((..(((....)))..(......).....))))))).......(((((((....).))))))(((((((.((...........)))))))))... ( -31.30)
>mm5.chr15/79354451-79354343
CGACCACAGCUCCUCUGACACCCCUACCCCCUCUCUGCCUGCGAGGCCCUCAAGGAAACUUUCCCUGAAAGAGUUGGAAGGGCACUUUCAAACUUUGUCCCUUCCCCC
......((((((.................((((.(.....).))))...(((.(((.....))).)))..))))))((((((.((...........)))))))).... ( -26.00)
>rn3.chr7/117034871-117034763
GGACCACAGCUCCCCUGACACCCCUACCCCCUCUUUGCCUGCGGGGACCUCAAGGAAACUUUCCCAGGAAGAGUUGGAAGGGCACUUUCAAACUUUGUCCCUUCCCCC
((....((((((.((((..........((((.(.......).)))).....(((....)))...))))..))))))((((((.((...........)))))))))).. ( -33.50)
>consensus
CCACCACAGCUCCCCUCACACCCCUACCCCCUCUCUGCCCGCGGGGCCCCCAAGGAAACUUUCCCUGAAAGAGUUGGAAGGGCACUUUCAAACUUUGUCCCUUCCCCC
........(((((((...........................))))))).........(((((...)))))....(((((((.((...........)))))))))... (-21.92 = -21.98 +   0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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