Structure #2782
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr22 |
| Strand | + |
| Position | 36,525,115 - 36,525,219 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, zebrafish |
| Mean pairwise identity | 67.15 |
| Columns | 120 |
| Mean single MFE | -46.73 |
| Consensus MFE | -18.72 |
| Combinations/base pair | 42 / 29 = 1.45 |
| SCI | 0.4 |
| z-score | -1.89 |
| RNA class probability | 0.793421 |
This structure is part of cluster 65190
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 67.15 Mean single sequence MFE: -46.73 Consensus MFE: -18.72 Energy contribution: -20.08 Covariance contribution: 1.36 Mean z-score: -1.89 Structure conservation index: 0.40 SVM decision value: 0.59 SVM RNA-class probability: 0.793421 Prediction: RNA ###################################################################### >hg17.chr22/36525115-36525219 UCAGGGAAAGUUUCCUUGGGGGCCCCAUGGACAGAGGGGGUAGAGGUGUGGAGGGACCGGUGGCGGGGUGACCCCCGAGAGGUGACCGGACCCCGGGGGAGCGA .........(((((((((((((((((..........)))))...............(((((.(((((....))).(....))).))))).)))))))))))).. ( -50.60) >canFam1.chr10/42709967-42709859 CCAGGGAAAGUUUGCUCAGGGGCCCCAAGGACAGAGAAGAGGCAGGGGUGCGAGGGGCCCGGUGGUGGGGUGAGCCCCCCGAGAGGUGACCGGACCCCGGGGGAGCGA .........((((.(((..(.(((((..................))))).)..((((.(((((.(.((((....))))((....))).))))).))))))).)))).. ( -46.57) >mm5.chr15/79354383-79354489 UCAGGGAAAGUUUCCUUGAGGGCCUCGCAGGCAGAGAGGGGGUAGGGGUGUCAGAGGAGCUGUGGUCGGGUGACCCCCGAGAGGUGACCGGACCCUGGGGAGGCGA (((((((.....)))))))..(((((.(..((.........)).(((((..(((.....)))(((((((....)).((....)).))))).))))).).))))).. ( -39.60) >rn3.chr7/117034803-117034909 CCUGGGAAAGUUUCCUUGAGGUCCCCGCAGGCAAAGAGGGGGUAGGGGUGUCAGGGGAGCUGUGGUCCGGUGACCCCCGAGAGGUGACCGGACCCCGGGGAGGCGA (((((...(((((((((((.(.((((....((.........)).))))).)))))))))))..((((((((.(((.......))).)))))))))))))....... ( -53.00) >danRer1.chrNA/154066399-154066298 GGGGUAGCUUGCUGGGGUCAGAGGCCCCCAGGUGGAGUGCCAGGGGGUACCCUUGGGCCUACACUGCAAGUCCAGGGAGAGAGGUGGACCCCUGGGUAGC ......((((((.(((((.....)))))..((((.((.(((..(((....)))..))))).))))))))))((((((............))))))..... ( -43.90) >consensus CCAGGGAAAGUUUCCUUGGG_____GGCCCCACAGACAGAGA_GGGGUAGGGGUGUCAGGGG__ACCGGUGG_____UCGGGUGA__CCCCCGAGAGGUGACCGGACCCCGGGGAAGCGA .........((((((((.........(((((............))))).(((((.(((.((.....)).)))........(((.(.....((....))).)))..))))))))))))).. (-18.72 = -20.08 + 1.36)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
