Structure #2784

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr22
Strand	-
Position	36,525,115 - 36,525,219
Number of sequences	5
Organisms	human, dog, mouse, rat, zebrafish
Mean pairwise identity	67.15
Columns	120
Mean single MFE	-37.64
Consensus MFE	-16.91
Combinations/base pair	22 / 16 = 1.38
SCI	0.45
z-score	-2.33
RNA class probability	0.988681

This structure is part of cluster 65190

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  67.15
 Mean single sequence MFE: -37.64
 Consensus MFE: -16.91
 Energy contribution: -16.47
 Covariance contribution:  -0.44
 Mean z-score:  -2.33
 Structure conservation index:   0.45
 SVM decision value:   2.13
 SVM RNA-class probability: 0.988681
 Prediction: RNA

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>hg17.chr22/36525219-36525115
UCGCUCCCCCGGGGUCCGGUCACCUCUCGGGGGUCACCCCGCCACCGGUCCCUCCACACCUCUACCCCCUCUGUCCAUGGGGCCCCCAAGGAAACUUUCCCUGA
..........((((.(((((.......(((((....)))))..))))).))))............((((.........))))....((.(((.....))).)). ( -33.00)
>canFam1.chr10/42709859-42709967
UCGCUCCCCCGGGGUCCGGUCACCUCUCGGGGGGCUCACCCCACCACCGGGCCCCUCGCACCCCUGCCUCUUCUCUGUCCUUGGGGCCCCUGAGCAAACUUUCCCUGG
..((((((((((((((((((..((....))((((....))))...))))))))))..(((....)))...............)))).....))))............. ( -44.00)
>mm5.chr15/79354489-79354383
UCGCCUCCCCAGGGUCCGGUCACCUCUCGGGGGUCACCCGACCACAGCUCCUCUGACACCCCUACCCCCUCUCUGCCUGCGAGGCCCUCAAGGAAACUUUCCCUGA
..(((((..(((((((.(((.((((.....)))).))).)))).(((.....))).....................))).)))))..(((.(((.....))).))) ( -31.80)
>rn3.chr7/117034909-117034803
UCGCCUCCCCGGGGUCCGGUCACCUCUCGGGGGUCACCGGACCACAGCUCCCCUGACACCCCUACCCCCUCUUUGCCUGCGGGGACCUCAAGGAAACUUUCCCAGG
.....((((((.((((((((.((((.....)))).)))))))).(((.....)))........................))))))(((.(((....)))....))) ( -39.40)
>danRer1.chrNA/154066298-154066399
GCUACCCAGGGGUCCACCUCUCUCCCUGGACUUGCAGUGUAGGCCCAAGGGUACCCCCUGGCACUCCACCUGGGGGCCUCUGACCCCAGCAAGCUACCCC
.....(((((((..........))))))).(((((.(((.(((((..((((....))))))).)).))).(((((........))))))))))....... ( -40.00)
>consensus
UCGCUCCCCCGGGGUCCGGUCACCUCUCGGGGG__UCACCCCA_____CCACAGGU__CCCCUGACACCCCUACCCC_UCUCUGCCCGCGGGGCC_____CCCAAGGAAACUUUCCCUGA
.....(((((((((..........))))))))).........................((((...........................))))..........(((....)))....... (-16.91 = -16.47 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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