Structure #28803

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	-
Position	97,145,716 - 97,145,836
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	69.94
Columns	120
Mean single MFE	-38.33
Consensus MFE	-24.04
Combinations/base pair	33 / 23 = 1.43
SCI	0.63
z-score	-1.7
RNA class probability	0.947621

This structure is part of cluster 13717

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  69.94
 Mean single sequence MFE: -38.33
 Consensus MFE: -24.04
 Energy contribution: -23.48
 Covariance contribution:  -0.56
 Mean z-score:  -1.70
 Structure conservation index:   0.63
 SVM decision value:   1.35
 SVM RNA-class probability: 0.947621
 Prediction: RNA

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>hg17.chr10/97145836-97145716
CACUGUGGGAAGGGUACCACUUCUCCCACAGGCAGAGCAUCCUGCCCUUCCCCUUACCCACAUCCAGUCUGGCUGCCUGUCAUGGAUGACACAUGAAGGCAAAGAGAAAGUGUUCUGGUC
..((((((((..((.....))..)))))))).((((((((....(.(((..((((.....((((((...((((.....)))))))))).......))))..))).)...))))))))... ( -43.90)
>mm5.chr19/39698664-39698566
CACUGCAGGAAGGGUGCCACUCCUCCUGAGAGCAGAGAUCCUGUCUUUAUGCCCAAAUCCAGUCUGGCCGCCUGCCAUGAAGAAGAGGCAUCCUGGUU
..((.(((((.(((.....))).)))))))..(((.((((((.(((((((((......((.....))......).))))))))..))).))))))... ( -28.70)
>rn3.chr1/245587443-245587341
CACUGCAGGAAGGGUGGCACUCUUCCUGAGAGCAGAGAUCCUGUCUUUCUUUGUGCCCAAAUCCAGUCUGGCUGCCUGCCAUGGAGAAGUGGCAUCCUGGUU
..((.(((((((((.....))))))))))).(((((((.........)))))))((((...((((...((((.....))))))))...).)))......... ( -36.40)
>canFam1.chr28/11921787-11921667
CACCAUGGGAAGGGCACCACUCUUCCCAUGGGCAGAGCAUCCUGUCGUUCCCUGUAACCAAAUCCAGUCUGGCCGCCUGGCACAGAUGACACAUGGAGGCAAAGAAAAAGCAUUCUGGUC
..((((((((((((.....)))))))))))).(((((.....(((..(((..(((..(((......((((((((....))).)))))......)))..)))..)))...))))))))... ( -44.30)
>consensus
CACUGCAGGAAGGGUACCACUCCUCCCAAGAGCAGAG_AUCCUGUCUUUCCCUGUACCCAAAUCCAGUCUGGCCGCCUGCCAUG_________________AAGAAAAAGCAUCCUGGUC
...(((((((((((.....)))))))))))(((((......))))).................((((....(((..................................)))...)))).. (-24.04 = -23.48 +  -0.56) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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