Structure #28805

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	+
Position	97,145,756 - 97,145,875
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.42
Columns	120
Mean single MFE	-52.12
Consensus MFE	-37.17
Combinations/base pair	44 / 36 = 1.22
SCI	0.71
z-score	-2.35
RNA class probability	0.9832

This structure is part of cluster 13717

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.42
 Mean single sequence MFE: -52.12
 Consensus MFE: -37.17
 Energy contribution: -37.67
 Covariance contribution:   0.50
 Mean z-score:  -2.35
 Structure conservation index:   0.71
 SVM decision value:   1.94
 SVM RNA-class probability: 0.983200
 Prediction: RNA

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>hg17.chr10/97145756-97145875
ACAGGCAGCCAGACUGGAUGUGGGUAAGGGGAAGGGCAGGAUGCUCUGCCUGUGGGAGAAGUGGUACCCUUCCCACAGUGCAGCUGCAUCCCGCCUAUCAGCUGACUGGCGGCACAGGC
....((.((((((((.......))).((..((.((((.((((((.(((((((((((((..(.....)..))))))))).))))..)))))).)))).))..))..))))).))...... ( -54.10)
>mm5.chr19/39698589-39698704
GCAGGCGGCCAGACUGGAUUUGGGCAUAAAGACAGGAUCUCUGCUCUCAGGAGGAGUGGCACCCUUCCUGCAGUGCAGCGACACGCCUGCCUGUCCGGUAACUGGCAGCACAGGC
((..((.((((((((((((..(((((....(...(..((.((((.(((((((((.(.....).))))))).)).)))).))..).).))))))))))))..))))).))....)) ( -48.30)
>rn3.chr1/245587364-245587483
GCAGGCAGCCAGACUGGAUUUGGGCACAAAGAAAGACAGGAUCUCUGCUCUCAGGAAGAGUGCCACCCUUCCUGCAGUGCAGGGACUUGCCUGCCUGUCCGGUGACUGGCAGCACAGGC
((..((.((((((((((((..(((((........(.((((.(((((((.(((((((((.(.....).))))))).)).))))))))))).)))))))))))))..))))).))....)) ( -53.50)
>canFam1.chr28/11921707-11921827
CCAGGCGGCCAGACUGGAUUUGGUUACAGGGAACGACAGGAUGCUCUGCCCAUGGGAAGAGUGGUGCCCUUCCCAUGGUGCAGCUGCAUUCCUGCCUAUCAGCUGACUGGCAGCACAGGC
((..((.((((((((......)))..(((.((....((((((((.((((((((((((((.(.....).)))))))))).))))..))).)))))....))..))).))))).))...)). ( -52.60)
>consensus
GCAGGCAGCCAGACUGGAUUUGGGCACAGGGAAAGACAGGAU_CUCUGCCCUCAGGAAGAGUGGCACCCUUCCCACAGUGCAGCGACAUGCCUGCCUAUCAGCUGACUGGCAGCACAGGC
....((.((((((((((((..((((............(((.....((((((((((((((.(.....).)))))))))).)))).......))))))))))))))..))))).))...... (-37.17 = -37.67 +   0.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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