Structure #28808

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	-
Position	97,145,756 - 97,145,875
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.42
Columns	120
Mean single MFE	-51.95
Consensus MFE	-43.31
Combinations/base pair	47 / 35 = 1.34
SCI	0.83
z-score	-2.9
RNA class probability	0.998928

This structure is part of cluster 13717

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.42
 Mean single sequence MFE: -51.95
 Consensus MFE: -43.31
 Energy contribution: -42.62
 Covariance contribution:  -0.69
 Mean z-score:  -2.90
 Structure conservation index:   0.83
 SVM decision value:   3.29
 SVM RNA-class probability: 0.998928
 Prediction: RNA

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>hg17.chr10/97145875-97145756
GCCUGUGCCGCCAGUCAGCUGAUAGGCGGGAUGCAGCUGCACUGUGGGAAGGGUACCACUUCUCCCACAGGCAGAGCAUCCUGCCCUUCCCCUUACCCACAUCCAGUCUGGCUGCCUGU
......((.(((((.(((..((..((((((((((..((((.((((((((..((.....))..)))))))))))).))))))))))..))..))............).))))).)).... ( -55.90)
>mm5.chr19/39698704-39698589
GCCUGUGCUGCCAGUUACCGGACAGGCAGGCGUGUCGCUGCACUGCAGGAAGGGUGCCACUCCUCCUGAGAGCAGAGAUCCUGUCUUUAUGCCCAAAUCCAGUCUGGCCGCCUGC
((((((.(((........)))))))))(((((.(((.((((.((.(((((.(((.....))).))))))).))))(((..(((..(((......)))..)))))))))))))).. ( -44.30)
>rn3.chr1/245587483-245587364
GCCUGUGCUGCCAGUCACCGGACAGGCAGGCAAGUCCCUGCACUGCAGGAAGGGUGGCACUCUUCCUGAGAGCAGAGAUCCUGUCUUUCUUUGUGCCCAAAUCCAGUCUGGCUGCCUGC
((..(.((.(((((.(...(((.(((((((...(((.((((.((.(((((((((.....))))))))))).)))).)))))))))).)))(((....))).....).))))).))).)) ( -49.20)
>canFam1.chr28/11921827-11921707
GCCUGUGCUGCCAGUCAGCUGAUAGGCAGGAAUGCAGCUGCACCAUGGGAAGGGCACCACUCUUCCCAUGGGCAGAGCAUCCUGUCGUUCCCUGUAACCAAAUCCAGUCUGGCCGCCUGG
.((.(.((.(((((...((((...(((((((.(((..((((.((((((((((((.....)))))))))))))))).))))))))))(((......)))......))))))))).))).)) ( -58.40)
>consensus
GCCUGUGCUGCCAGUCACCGGACAGGCAGGCAUGCAGCUGCACUGCAGGAAGGGUACCACUCCUCCCAAGAGCAGAG_AUCCUGUCUUUCCCUGUACCCAAAUCCAGUCUGGCCGCCUGC
......((.(((((((....))).((((((.((((..((((.((((((((((((.....)))))))))))))))).)))))))))).......................)))).)).... (-43.31 = -42.62 +  -0.69)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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