Structure #28810

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	+
Position	97,145,796 - 97,145,895
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	77.24
Columns	105
Mean single MFE	-47.43
Consensus MFE	-34.36
Combinations/base pair	41 / 30 = 1.37
SCI	0.72
z-score	-2.28
RNA class probability	0.990715

This structure is part of cluster 13717

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 105
 Columns: 105
 Strand: +
 Mean pairwise identity:  77.24
 Mean single sequence MFE: -47.42
 Consensus MFE: -34.36
 Energy contribution: -34.61
 Covariance contribution:   0.25
 Mean z-score:  -2.28
 Structure conservation index:   0.72
 SVM decision value:   2.23
 SVM RNA-class probability: 0.990715
 Prediction: RNA

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>hg17.chr10/97145796-97145895
AUGCUCUGCCUGUGGGAGAAGUGGUACCCUUCCCACAGUGCAGCUGCAUCCCGCCUAUCAGCUGACUGGCGGCACAGGCAGCGAUGGGAGCCGGUGGGG
((((.(((((((((((((..(.....)..))))))))).))))..))))((((((((((.((((.(((......))).))))))))(....))))))). ( -47.40)
>mm5.chr19/39698625-39698729
AUCUCUGCUCUCAGGAGGAGUGGCACCCUUCCUGCAGUGCAGCGACACGCCUGCCUGUCCGGUAACUGGCAGCACAGGCAGUGAUGGGUGCUGAGCUGGUAGGG
..((((((...(((((((.(.....).)))))))((((.(((((.(((((.(((((((((((...))))....)))))))))).))..))))).)))))))))) ( -44.80)
>rn3.chr1/245587404-245587508
AUCUCUGCUCUCAGGAAGAGUGCCACCCUUCCUGCAGUGCAGGGACUUGCCUGCCUGUCCGGUGACUGGCAGCACAGGCAGCAAUGGGAGCUGAGCUGGCAGGG
.(((((((.(((((((((.(.....).))))))).)).)))))))((((((((((.(((....))).)))))..(((.((((.......))))..)))))))). ( -49.40)
>canFam1.chr28/11921747-11921845
AUGCUCUGCCCAUGGGAAGAGUGGUGCCCUUCCCAUGGUGCAGCUGCAUUCCUGCCUAUCAGCUGACUGGCAGCACAGGCGGAUGGGAGCUGGUGGGG
((((.((((((((((((((.(.....).)))))))))).))))..)))).....((((((((((..(((...((....))...))).)))))))))). ( -48.10)
>consensus
AU_CUCUGCCCUCAGGAAGAGUGGCACCCUUCCCACAGUGCAGCGACAUGCCUGCCUAUCAGCUGACUGGCAGCACAGGCAGCGAUGG_____GAGCUGGUAGGG
.....((((((((((((((.(.....).)))))))))).)))).......((((((((((((....)))))).....(((...............))))))))). (-34.36 = -34.61 +   0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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