Structure #28812

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	-
Position	97,145,796 - 97,145,895
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	77.24
Columns	105
Mean single MFE	-45.75
Consensus MFE	-35.1
Combinations/base pair	40 / 29 = 1.38
SCI	0.77
z-score	-3.22
RNA class probability	0.999862

This structure is part of cluster 13717

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 105
 Columns: 105
 Strand: +
 Mean pairwise identity:  77.24
 Mean single sequence MFE: -45.75
 Consensus MFE: -35.10
 Energy contribution: -33.66
 Covariance contribution:  -1.44
 Mean z-score:  -3.22
 Structure conservation index:   0.77
 SVM decision value:   4.29
 SVM RNA-class probability: 0.999862
 Prediction: RNA

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>hg17.chr10/97145895-97145796
CCCCACCGGCUCCCAUCGCUGCCUGUGCCGCCAGUCAGCUGAUAGGCGGGAUGCAGCUGCACUGUGGGAAGGGUACCACUUCUCCCACAGGCAGAGCAU
........((((.....(((((..((.(((((.(((....))).))))).)))))))(((.((((((((..((.....))..))))))))))))))).. ( -50.40)
>mm5.chr19/39698729-39698625
CCCUACCAGCUCAGCACCCAUCACUGCCUGUGCUGCCAGUUACCGGACAGGCAGGCGUGUCGCUGCACUGCAGGAAGGGUGCCACUCCUCCUGAGAGCAGAGAU
........((((.((((((.((.((((..((((((((.(((....))).))))((((...)))))))).)))))).))))))...((.....))))))...... ( -41.10)
>rn3.chr1/245587508-245587404
CCCUGCCAGCUCAGCUCCCAUUGCUGCCUGUGCUGCCAGUCACCGGACAGGCAGGCAAGUCCCUGCACUGCAGGAAGGGUGGCACUCUUCCUGAGAGCAGAGAU
.(((((((((.((((.......)))).....)))....(((....))).))))))...(((.((((.((.(((((((((.....))))))))))).)))).))) ( -44.90)
>canFam1.chr28/11921845-11921747
CCCCACCAGCUCCCAUCCGCCUGUGCUGCCAGUCAGCUGAUAGGCAGGAAUGCAGCUGCACCAUGGGAAGGGCACCACUCUUCCCAUGGGCAGAGCAU
........((((...(((((((((((((.....))))..)))))).))).......(((.((((((((((((.....))))))))))))))))))).. ( -46.60)
>consensus
CCCCACCAGCUC_____CCAUCGCUGCCUGUGCUGCCAGUCACCGGACAGGCAGGCAUGCAGCUGCACUGCAGGAAGGGUACCACUCCUCCCAAGAGCAGAG_AU
...(((..((...............))..)))(((((.(((....))).)))))........((((.((((((((((((.....))))))))))))))))..... (-35.10 = -33.66 +  -1.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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