Structure #30290
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr10 |
| Strand | + |
| Position | 104,392,959 - 104,393,076 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 90.64 |
| Columns | 120 |
| Mean single MFE | -39.25 |
| Consensus MFE | -32.62 |
| Combinations/base pair | 42 / 38 = 1.11 |
| SCI | 0.83 |
| z-score | -1.41 |
| RNA class probability | 0.544015 |
This structure is part of cluster 14402
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 90.64 Mean single sequence MFE: -39.25 Consensus MFE: -32.62 Energy contribution: -33.00 Covariance contribution: 0.38 Mean z-score: -1.41 Structure conservation index: 0.83 SVM decision value: 0.02 SVM RNA-class probability: 0.544015 Prediction: RNA ###################################################################### >hg17.chr10/104392959-104393076 UUUUAUUUUUUGGACAGGACCGGGGUGGGUGGAGCAGAGGUGGAGAGAAAUCGGGACUUGGCAUUUUCUCCCUCUCUCUCUCCUAAUUUGUUGGAGGCCGCCAGCCCUCCCCUUGGA ..............((((...(((((.(((((((((((...(((((((....((((............))))....)))))))...)))))).....))))).)))))...)))).. ( -40.40) >canFam1.chr28/18137292-18137411 UUUUAUUUUUUGGAAAGGACCGGGGUGGGUGGAGCAAAGGUGGAGAGAAAUCGGGACUUGGCAUUUUCUCCUCUCUCUCUCUCCUAAUUUGAGGGAGGCCGCCAGCCCUCCCCUUAAAA ...........((......))((((.((((((.((...((.((((((((.(((.....)))..)))))))).))(((((((.........)))))))))..))).))).))))...... ( -40.30) >mm5.chr??/466-585 UUUUUUUUUUUGGAAAGGAUCGGGAUGGGUGGAGCAGAGGUAGAGAGAAAUCAAGACUUGGCAUUUUUCUCCUUCUCUCUCUCCUAAUUUGUUGGAGACCACCAGCCCUCCCCUUGGAG ..............((((...(((...(((((.(.(((((..((((((((((........).)))))))))..))))))(((((.........))))))))))..)))...)))).... ( -38.50) >rn3.chr1/251987637-251987756 UUUUUUUUUUUGGAAAGGAUCGGGAUGGGUGGAGCAGAGGUAGAGAGAAAUCAAGACUUGGCAUUUUUCUCCUUCUCUCUCUCCUAAUUUGCUGGAGGCCACCAGCCCUCCCCUUGGAG ..............((((...(((...(((((((.(((((..((((((((((........).)))))))))..)))))))((((.........)))).)))))..)))...)))).... ( -37.80) >consensus UUUUAUUUUUUGGAAAGGACCGGGAUGGGUGGAGCAGAGGUAGAGAGAAAUCAAGACUUGGCA_UUUUCUCC_CUCUCUCUCUCCUAAUUUGUUGGAGGCCACCAGCCCUCCCCUUGGAG ......(((..((...(((..(((...(((((((.(((((.(((((((((((........).)))))))))).).))))))((((.........)))).)))))..))))))))..))). (-32.62 = -33.00 + 0.38)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
