Structure #30293

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	+
Position	104,392,999 - 104,393,111
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.29
Columns	120
Mean single MFE	-35.78
Consensus MFE	-19.12
Combinations/base pair	31 / 27 = 1.15
SCI	0.53
z-score	-3.11
RNA class probability	0.952593

This structure is part of cluster 14402

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.29
 Mean single sequence MFE: -35.78
 Consensus MFE: -19.12
 Energy contribution: -22.00
 Covariance contribution:   2.88
 Mean z-score:  -3.11
 Structure conservation index:   0.53
 SVM decision value:   1.40
 SVM RNA-class probability: 0.952593
 Prediction: RNA

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>hg17.chr10/104392999-104393111
UGGAGAGAAAUCGGGACUUGGCAUUUUCUCCCUCUCUCUCUCCUAAUUUGUUGGAGGCCGCCAGCCCUCCCCUUGGAAAAAAAAAAAUCCCACCAAAAAAAAAAAAAAAAGA
.(((((((....((((............))))....)))))))...((((.(((.(((.....))).(((....)))............))).))))............... ( -25.40)
>canFam1.chr28/18137332-18137450
UGGAGAGAAAUCGGGACUUGGCAUUUUCUCCUCUCUCUCUCUCCUAAUUUGAGGGAGGCCGCCAGCCCUCCCCUUAAAAAAAAAGGGAAAAAAAUCCCCCCGAGAGAGCGGGCGAGCG
.((((((((.(((.....)))..)))))))).(((.(((((((....(((((((((((.(....).))).))))))))......((((......))))...))))))).)))...... ( -40.50)
>mm5.chr??/506-619
UAGAGAGAAAUCAAGACUUGGCAUUUUUCUCCUUCUCUCUCUCCUAAUUUGUUGGAGACCACCAGCCCUCCCCUUGGAGGAAAAAAAAAAUCCCACCAAAGGGAGGGUGGAAA
..(((((((....(((...........)))..)))))))(((((.........)))))...(((.(((((((.((((.((............)).)))).))))))))))... ( -39.30)
>rn3.chr1/251987677-251987790
UAGAGAGAAAUCAAGACUUGGCAUUUUUCUCCUUCUCUCUCUCCUAAUUUGCUGGAGGCCACCAGCCCUCCCCUUGGAGAAAAAAAAAAUCCCACCAAAGGGAGGGGUGGAAA
.((((((((....(((...........)))..))))))))((((.........))))....(((.(((((((.((((.(.............).)))).))))))).)))... ( -37.92)
>consensus
UAGAGAGAAAUCAAGACUUGGCA_UUUUCUCC_CUCUCUCUCUCCUAAUUUGUUGGAGGCCACCAGCCCUCCCCUUGGAG_AAA____AAAAAAAUCCCACCAAAAGAAGGGGAGAAAG_
.((((((((...((((...........))))..))))))))((((.........))))........(((((((.((((......................)))).)))))))........ (-19.12 = -22.00 +   2.88)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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