Structure #30297

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	-
Position	104,393,037 - 104,393,142
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	69.83
Columns	120
Mean single MFE	-43.35
Consensus MFE	-23.93
Combinations/base pair	40 / 26 = 1.54
SCI	0.55
z-score	-3.76
RNA class probability	0.999965

This structure is part of cluster 14402

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  69.83
 Mean single sequence MFE: -43.35
 Consensus MFE: -23.93
 Energy contribution: -23.44
 Covariance contribution:  -0.50
 Mean z-score:  -3.76
 Structure conservation index:   0.55
 SVM decision value:   4.97
 SVM RNA-class probability: 0.999965
 Prediction: RNA

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>hg17.chr10/104393142-104393037
GAGGGCCCCGCGGCGUCCUCUCGCUCCUGAUUCUUUUUUUUUUUUUUUUGGUGGGAUUUUUUUUUUUCCAAGGGGAGGGCUGGCGGCCUCCAACAAAUUAGGAGA
((((((((...)).))))))...(((((((((.............((((((..(((......)))..))))))(((((.(....).)))))....))))))))). ( -36.90)
>canFam1.chr28/18137484-18137371
GAGGGUCCUGCCGCGGGCUUUCUCCGCGCUCGCCCGCUCGCCCGCUCUCUCGGGGGGAUUUUUUUCCCUUUUUUUUUAAGGGGAGGGCUGGCGGCCUCCCUCAAAUUAGGAGA
(((((....(((((.(((((((((((((......)))...((((......))))((((......))))...........)))))))))).)))))..)))))........... ( -53.00)
>mm5.chr??/638-545
GAGGGUCCUGUAGCUCGCUUUUCCACCCUCCCUUUGGUGGGAUUUUUUUUUUCCUCCAAGGGGAGGGCUGGUGGUCUCCAACAAAUUAGGAGA
..((((......))))(((...(((((((((((((((.((((........)))).)))))))))))).))).)))((((.........)))). ( -41.80)
>rn3.chr1/251987809-251987716
GAGGGUCCUGUAGCUCGCUUUUCCACCCCUCCCUUUGGUGGGAUUUUUUUUUUCUCCAAGGGGAGGGCUGGUGGCCUCCAGCAAAUUAGGAGA
..((((......))))(((...(((.((((((((((((.(..(.......)..).)))))))))))).))).)))((((.........)))). ( -41.70)
>consensus
GAGGGUCCUGCAGC_______________UCGCU_______CUUUCACCCCUCCCUUUGGUGGGAUUUUUUU____UUU_CUCCAAGGGGAGGGCUGGCGGCCUCCAACAAAUUAGGAGA
(..((((((...(((...............)))...............((((((((((((.((((............)))).))))))))))))..)).))))..).............. (-23.93 = -23.44 +  -0.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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