Structure #4873
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr1 |
Strand | + |
Position | 18,733,577 - 18,733,696 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 79.94 |
Columns | 120 |
Mean single MFE | -49.68 |
Consensus MFE | -34.45 |
Combinations/base pair | 33 / 27 = 1.22 |
SCI | 0.69 |
z-score | -1.68 |
RNA class probability | 0.663136 |
This structure is part of cluster 776
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.94 Mean single sequence MFE: -49.67 Consensus MFE: -34.45 Energy contribution: -34.83 Covariance contribution: 0.37 Mean z-score: -1.68 Structure conservation index: 0.69 SVM decision value: 0.27 SVM RNA-class probability: 0.663136 Prediction: RNA ###################################################################### >hg17.chr1/18733577-18733696 AUUAUGGCAAUUAAUUACCCAGGGACAAUGGAGCACAGCCCUGCCCUCUGCCCGCGCCUUCCAGUGACAGGGGGUGGGCGGAGGGCGCCGGGAGGGGGAAGUUAAGCGGCUGCCUGUUU .....((((.((((((.(((((((....((.....)).))))(((((((((((((.((((........)))).))))))))))))).((....))))).)))))).....))))..... ( -58.00) >mm5.chr4/15880951-15880838 AUUACCACAAUUAAUCACCCAGGGACAAUGGUGCUGUCAUGCCCUCAGCCUGGCCUUCAAGGGGCAGGGGUGGGUGGAGGGCACACGAGGGGGGUUUAAGCAGCUGCCCAUUU ..............................(((((.((.(((((.(..((((.(((....))).)))).).))))))).)))))....(((.((((.....)))).))).... ( -40.10) >rn3.chr5/14478653-14478538 AUUACCACAAUUAAUCACCCAGGGACAAUGACGCUGUCAUGCCCUCAGCCUGGCCUUCAAGGGGAAGGGAGUGGGUGGAGGGCAUCCGAGGGGGGGGUUAAGCAGCUGCCCAUUU .................((..((((((.......))))((((((((.(((((.(((((.....)))))...))))).))))))))))..))(((.((((....)))).))).... ( -42.40) >canFam1.chr2/7158703-7158584 AUUACCGCAAUUAAUUACCCGGGACAAUGGCUCUCAGCCCUGCCCUCUGCCCGCGCCUCCGAGUGGCAGGGGGUGGGCGGAGGGCACCGGGAGGAGGGAGGUGAAGCGGCUGCCUGUUU ....((((..........(((......)))(((((..(((((((((((((((((.(((((....))..))).))))))))))))))..)))..))))).......)))).......... ( -58.20) >consensus AUUACCACAAUUAAUCACCCAGGGACAAUGGCG__CAGCCAUGCCCUCAGCCCG_GCCUUCAAGGGGCAGGGGGUGGGCGGAGGGCACCCGAAGGGGG__GGUUAAGCAGCUGCCCAUUU .....................(((.((.((...........((((((((((((((.((((........)))).))))))))))))))((....))............))..))))).... (-34.45 = -34.83 + 0.37)