Structure #488
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr21 |
Strand | + |
Position | 25,637,739 - 25,637,825 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 75 |
Columns | 92 |
Mean single MFE | -19.86 |
Consensus MFE | -12.76 |
Combinations/base pair | 30 / 20 = 1.50 |
SCI | 0.64 |
z-score | -1.8 |
RNA class probability | 0.903541 |
This structure is part of cluster 63887
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 92 Columns: 92 Strand: + Mean pairwise identity: 75.00 Mean single sequence MFE: -19.86 Consensus MFE: -12.76 Energy contribution: -12.72 Covariance contribution: -0.04 Mean z-score: -1.80 Structure conservation index: 0.64 SVM decision value: 1.03 SVM RNA-class probability: 0.903541 Prediction: RNA ###################################################################### >hg17.chr21/25637739-25637825 CCAUAAGCAGGCAGACAAAAGCUGUGAGAGAGAGGCUUUCCUAUCAAAUGUGAUGGGAAAUAAGAUUUAAAUAUGGGUUUGCCCAC .........(((((((....(((.(....)...)))((((((((((....))))))))))................)))))))... ( -24.80) >mm5.chr16/84910136-84910220 CCAUAAGCAGGCAAACAGAAAAGCUGUGAGAGGCUUUCUUAUUAAAUGUGAUUGGGAAUAAGAUUUAAAUAUUGGUUUGCCCAC .........(((((((....(((((......)))))(((((((..(......)...)))))))...........)))))))... ( -17.90) >rn3.chr11/24001052-24001136 CCAUAAGCAGGCAAACAGAAAAGCUGUGAGAGGCUUCCCUAUUAAAUGUGAUGGGAAAUAAGAUUUAAAUAUUGGUUUGCCCAC .........(((((((....(((((......))))).(((((((....)))))))...................)))))))... ( -20.60) >canFam1.chr31/23915016-23915100 CCAUAAGCAGGCAGACAGAAAAGCUGCAAGAGGCUUUCCUAUCAAAUGUGAUGGGAAAUAAGAUUUAAAUAUCGGUUUGCCCAC .........(((((((.((...(((......)))((((((((((....)))))))))).............)).)))))))... ( -25.30) >galGal2.chr1/96200404-96200489 GUAGGGUCAAACAGAUUUUAAUAAAAUCAUGAUGUUUUCUUAUACAAGUAACAGUGAAUAAACAUUUAUAUUGUGGGCUACUCAC ...(((((..((((((((.....)))))..(((((((..((((..........))))..))))))).....)))..)..)))).. ( -10.70) >consensus CCAUAAGCAGGCAGAC___AGAAAAGCUGU____GAGAGGCUUUCCUAUCAAAUGUGAUGGGAAAUAAG_AUUUAAAUAUUGGUUUGCCCAC .........(((((((........((((..........))))(((((((((....)))))))))..................)))))))... (-12.76 = -12.72 + -0.04)