Structure #5055
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | - |
| Position | 21,639,010 - 21,639,129 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 82.31 |
| Columns | 120 |
| Mean single MFE | -44.28 |
| Consensus MFE | -34.38 |
| Combinations/base pair | 34 / 25 = 1.36 |
| SCI | 0.78 |
| z-score | -3.47 |
| RNA class probability | 0.998914 |
This structure is part of cluster 881
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 82.31 Mean single sequence MFE: -44.28 Consensus MFE: -34.38 Energy contribution: -33.38 Covariance contribution: -1.00 Mean z-score: -3.47 Structure conservation index: 0.78 SVM decision value: 3.28 SVM RNA-class probability: 0.998914 Prediction: RNA ###################################################################### >hg17.chr1/21639129-21639010 UCUGACUAUUUUUAAAGUAGGGCCAAGAGCAUAACAGCAGCCGCCUGCGGUGACCACCACACUAGUGUUCUCUUGUCACCGCGGGUGCCAGCCCGGGCCACUGCCCCUGGCUGACACCU .....(((((.....)))))(((.....((......))....))).((((((((....(((....)))......))))))))(((((.(((((.((((....))))..))))).))))) ( -45.10) >mm5.chr4/17932811-17932930 CCUAACUAUUUUUAAAGCAGGGGCCAAGAACAUAACAGCCAUAGCCCAUGGUGACCACCAUACUGUGUCCUUCUGUCACCGUGGGCACCAGCUCGACUUGCUGCCCCUGGCUGACACCU ...............(((((((((...................(((((((((((((((......))).......))))))))))))...(((.......))))))))).)))....... ( -42.11) >rn3.chr5/16585798-16585917 CCUAACUAUUUUUAAAGUAGGGGCCAAGAACAUAACAGCCACAGCCCAUGGUGACCACCAUACUGUGUCCUUCUGUCACCGUGGGCACCAGCCCAUCUUGCUGCCCCUGGCUGACACCU (((.(((........))).))).............((((((..(((((((((((((((......))).......))))))))))))..((((.......))))....))))))...... ( -41.61) >canFam1.chr2/9478745-9478861 CCUGACUAUUUUUAAAAUGGGGCCAAGAGCAUAACAGCCACCGCCUGCGGUGACCACCACACCGGUGUCCUCCUGUCACCGCAGGCGCCAGGCCAGGCCGCCGCCCCUGGACACCU ..................(((((...(.((......(((..(((((((((((((((((.....)))).......)))))))))))))...)))...)))...)))))......... ( -48.31) >consensus CCUAACUAUUUUUAAAGUAGGG_CCAAGAACAUAACAGCCACAGCCCACGGUGACCACCACACU_GUGUCCUCCUGUCACCGCGGGCACCAGCCCAGCCCGCUGCCCCUGGCUGACACCU .................(((((((...................((((((((((((....(((....)))......))))))))))))(((......)))....))))))).......... (-34.38 = -33.38 + -1.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
