Structure #7634
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | + |
| Position | 38,398,235 - 38,398,355 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 97.5 |
| Columns | 120 |
| Mean single MFE | -26.71 |
| Consensus MFE | -22.03 |
| Combinations/base pair | 31 / 29 = 1.07 |
| SCI | 0.83 |
| z-score | -2.22 |
| RNA class probability | 0.527762 |
This structure is part of cluster 2061
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 97.50 Mean single sequence MFE: -26.71 Consensus MFE: -22.03 Energy contribution: -23.54 Covariance contribution: 1.50 Mean z-score: -2.22 Structure conservation index: 0.83 SVM decision value: -0.01 SVM RNA-class probability: 0.527762 Prediction: RNA ###################################################################### >hg17.chr1/38398235-38398355 CUGCAAAUCAUUCUGAAAAUUAGCUUUCUAUGGGAAAAUCUAUAUACUAAUUAACUCCAUGGCCUCUCUAACGAGUUUAAGCACAAUAAGGCCUCUGAAAAUAUCGAGGCAUUUUGCAGC (((((((...............((((.(((((((.....................)))))))...(((....)))...))))........(((((.((.....)))))))..))))))). ( -27.50) >mm5.chr4/31311015-31310895 CUGCAAAUCAUUCUGAAAAUUAGCUUUCUAUGGGAAAAUCCAUAUACUAAUUAACUCCGUGGCCUCUCUAACGAGUUUAAGCACAAUAAGGCCUCUGAAAAUAUCAAGGCAUUUUGCAGC (((((((...(..(((.((((((.....(((((......)))))..))))))...((.(.((((((((....))).............))))).).)).....)))..)...))))))). ( -27.31) >rn3.chr5/29316318-29316198 CUGCAAAUCAUUCUGAAAAUUAGCUUUCUAUGGGAAAAUCCAUAUACUAAUUAACUCCGUGGCCUCUCUAACGAGUUUAAGCACAAUAAGGCCUCUGAAAAUAUCAAGCCAUUUUGCAGC (((((((......(((.((((((.....(((((......)))))..))))))...((.(.((((((((....))).............))))).).)).....)))......))))))). ( -26.41) >canFam1.chr15/59876552-59876432 CUGCAAAUCAUUCUGAAAAUUAGCUUUCUAUGGGAAAAUCUAUAUACUAAUUAACUCCAUGGCCUCUCUAACGAGUUUAAGCACAAUAAGGCCGCUGAAAAUAUCGAGGCAUUUUGCAGC (((((((...(((.((...(((((.....(((((.....................)))))((((((((....))).............)))))))))).....)))))....))))))). ( -25.61) >consensus CUGCAAAUCAUUCUGAAAAUUAGCUUUCUAUGGGAAAAUCCAUAUACUAAUUAACUCCAUGGCCUCUCUAACGAGUUUAAGCACAAUAAGGCCUCUGAAAAUAUCAAGGCAUUUUGCAGC (((((((......(((.((((((.....(((((......)))))..))))))........((((((((....))).............)))))..........)))......))))))). (-22.03 = -23.54 + 1.50)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
