Structure #9172
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | - |
| Position | 48,710,796 - 48,710,909 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 76.86 |
| Columns | 120 |
| Mean single MFE | -42.36 |
| Consensus MFE | -31.98 |
| Combinations/base pair | 43 / 28 = 1.54 |
| SCI | 0.75 |
| z-score | -3.15 |
| RNA class probability | 0.999314 |
This structure is part of cluster 2793
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.86 Mean single sequence MFE: -42.36 Consensus MFE: -31.98 Energy contribution: -31.18 Covariance contribution: -0.80 Mean z-score: -3.15 Structure conservation index: 0.75 SVM decision value: 3.50 SVM RNA-class probability: 0.999314 Prediction: RNA ###################################################################### >hg17.chr1/48710909-48710796 CCCUUCCUGUCUGUGGAAACAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUUAGAACACAGGGAGAGGAAGGGAGGCUCCAGGGAG ((((((((.(((.((.....((((((((..(((.....)))))))))))...........((((........)))).........)).))).))))))))...(((....))) ( -46.20) >canFam1.chr15/51837599-51837718 CCCUUCCUGUCUGUGAAGCGGCAGGUUGAGUCACUGCGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUUCGGAGACGGGAGAUGGGGAGAGGAAGGGAGGCUCAGGGGAG ((((((((.(((.(.....(((((((((.((....))..)))))))))............((((((....((......))....))))))..).))).))))))))...(((....))) ( -46.70) >mm5.chr4/44131603-44131716 CCCUUCCUGCCUGUGGAAGCAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUUAGGAGAUAGGGAGAGGGAGGGAGGCUCCAGGGAG .(((((((.(((........((((((((..(((.....)))))))))))............(((((.....................)))))))).)))))))(((....))) ( -42.60) >rn3.chr5/39898220-39898333 CCCUUCCUGUCUGUGGAAGCAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAACGAGGAUUAGGAGAUAGGGAGAGGGAGGGAGGCUCCAGGGAG ((((((((.(((.((.....((((((((..(((.....)))))))))))...........(((((((....)).)))...))...)).))).))))))))...(((....))) ( -47.40) >galGal2.chr8/22933645-22933542 GGCUCUCUGUCUCCAAGAGCAGAGUAAUGAAUAGCUGUGACAGUGUGAUAAUUAAAAUGACCUCUUGGAGAUAUGGAUUAGAAGGUAUGCAGAGGGGGGAUGA ..(((((((((((((((((((...((((.....((((...))))......))))...))..))))))))))))((.((........)).)))))))....... ( -28.90) >consensus CCCUUCCUGUCUGUGGAAGCAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUU_______AGGAGAUAGGGAGAGGGAGGGAGGCUCCAGGGAG ((((((((.(((.((.....(((((((((.((....))..)))))))))...........((((........))))................)).))).))))))))............. (-31.98 = -31.18 + -0.80)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
