Structure #9174
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | + |
| Position | 48,710,829 - 48,710,938 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 78.28 |
| Columns | 120 |
| Mean single MFE | -36.6 |
| Consensus MFE | -25.22 |
| Combinations/base pair | 35 / 25 = 1.40 |
| SCI | 0.69 |
| z-score | -2.83 |
| RNA class probability | 0.997457 |
This structure is part of cluster 2793
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 78.28 Mean single sequence MFE: -36.60 Consensus MFE: -25.22 Energy contribution: -25.54 Covariance contribution: 0.32 Mean z-score: -2.83 Structure conservation index: 0.69 SVM decision value: 2.86 SVM RNA-class probability: 0.997457 Prediction: RNA ###################################################################### >hg17.chr1/48710829-48710938 AAUCCUCAUUUCCGGGAGGUCAUUUUAAUUAGCAGGCUGUCAUGGUGACUCAGCCUGCUGUUUCCACAGACAGGAAGGGAGCAGACCCCCCUGGACCCAUUCAUCAUA ..........((((((.((((.........(((((((((....(....).)))))))))((((((...........)))))).))))..))))))............. ( -40.90) >canFam1.chr15/51837747-51837639 GAAUCCUCAUUUCCGGGAGGUCAUUUUAAUUAGCAGGCUGUCGCAGUGACUCAACCUGCCGCUUCACAGACAGGAAGGGAGCACCCUCCUCGGGACCCAUUCAUCAUA ((((......((((((((((............(((((..(((.....)))....))))).(((((.(.....)....)))))..))))).)))))...))))...... ( -31.00) >mm5.chr4/44131745-44131636 AAUCCUCAUUUCCGGGAGGUCAUUUUAAUUAGCAGGCUGUCAUGGUGACUCAGCCUGCUGCUUCCACAGGCAGGAAGGGAGUAGACUCCCCUGGACCCAUUCAUCACA ..........((((((..((((((((...((((((((((....(....).))))))))))(((((.......)))))))))).)))..))).)))............. ( -40.90) >rn3.chr5/39898362-39898253 AAUCCUCGUUUCCGGGAGGUCAUUUUAAUUAGCAGGCUGUCAUGGUGACUCAGCCUGCUGCUUCCACAGACAGGAAGGGAGUAGACUCCCCUGGACCCAUUCAUCACA .......(..((((((..((((((((...((((((((((....(....).))))))))))(((((.......)))))))))).)))..))).)))..).......... ( -42.10) >galGal2.chr8/22933565-22933682 AAUCCAUAUCUCCAAGAGGUCAUUUUAAUUAUCACACUGUCACAGCUAUUCAUUACUCUGCUCUUGGAGACAGAGAGCCAGCACUAUGCCUUUUGGAUGCCUUGGAAUUCAUCAUA ..((((....(((((((((.(((.............(((...)))............(((((((((....)).)))).)))....)))))))))))).....)))).......... ( -28.10) >consensus _AAUCCUCAUUUCCGGGAGGUCAUUUUAAUUAGCAGGCUGUCAUGGUGACUCAGCCUGCUGCUUCCACAGACAGGAAGGGAGCA___________GACUCCCCUGGACCCAUUCAUCAUA ...........((((((.((((........((((((((((...........))))))))))(((((.......))))).................))))..))))))............. (-25.22 = -25.54 + 0.32)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
