Structure #9178
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Strand | - |
| Position | 48,710,829 - 48,710,938 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 78.28 |
| Columns | 120 |
| Mean single MFE | -36.46 |
| Consensus MFE | -23.82 |
| Combinations/base pair | 47 / 30 = 1.57 |
| SCI | 0.65 |
| z-score | -1.78 |
| RNA class probability | 0.794043 |
This structure is part of cluster 2793
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 78.28 Mean single sequence MFE: -36.46 Consensus MFE: -23.82 Energy contribution: -22.42 Covariance contribution: -1.40 Mean z-score: -1.78 Structure conservation index: 0.65 SVM decision value: 0.60 SVM RNA-class probability: 0.794043 Prediction: RNA ###################################################################### >hg17.chr1/48710938-48710829 UAUGAUGAAUGGGUCCAGGGGGGUCUGCUCCCUUCCUGUCUGUGGAAACAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUU .............(((.((((((((.......((((.......))))..((((((((..(((.....))))))))))).........))))))))))).......... ( -39.10) >canFam1.chr15/51837639-51837747 UAUGAUGAAUGGGUCCCGAGGAGGGUGCUCCCUUCCUGUCUGUGAAGCGGCAGGUUGAGUCACUGCGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUUC ..........(((((((((((((((.....)))))))(((....((..(((((((((.((....))..)))))))))..)).....)))..........)).)))))) ( -32.70) >mm5.chr4/44131636-44131745 UGUGAUGAAUGGGUCCAGGGGAGUCUACUCCCUUCCUGCCUGUGGAAGCAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUU .((.....((((((..(((((((....)))))))...))))))....))((((((((..(((.....)))))))))))...........((((........))))... ( -38.60) >rn3.chr5/39898253-39898362 UGUGAUGAAUGGGUCCAGGGGAGUCUACUCCCUUCCUGUCUGUGGAAGCAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAACGAGGAUU ...........((((...(((((....)))))((((.......))))..((((((((..(((.....))))))))))).........))))(((((....)).))).. ( -40.70) >galGal2.chr8/22933682-22933565 UAUGAUGAAUUCCAAGGCAUCCAAAAGGCAUAGUGCUGGCUCUCUGUCUCCAAGAGCAGAGUAAUGAAUAGCUGUGACAGUGUGAUAAUUAAAAUGACCUCUUGGAGAUAUGGAUU ..........((((.(((((((....))....))))).......((((((((((((((...((((.....((((...))))......))))...))..)))))))))))))))).. ( -31.20) >consensus UAUGAUGAAUGGGUCCAGGGGAGUC___________UGCUCCCUUCCUGUCUGUGGAAGCAGCAGGCUGAGUCACCAUGACAGCCUGCUAAUUAAAAUGACCUCCCGGAAAUGAGGAUU_ ...........((((...((((((.............))))))((((.......))))..(((((((((.((....))..))))))))).........))))(((((....)).)))... (-23.82 = -22.42 + -1.40)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
