Structure #32371

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	-
Position	130,490,395 - 130,490,515
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	94.67
Columns	120
Mean single MFE	-28.52
Consensus MFE	-25.62
Combinations/base pair	31 / 31 = 1.00
SCI	0.9
z-score	-2.05
RNA class probability	0.997042

This structure is part of cluster 15670

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  94.67
 Mean single sequence MFE: -28.52
 Consensus MFE: -25.62
 Energy contribution: -25.82
 Covariance contribution:   0.20
 Mean z-score:  -2.05
 Structure conservation index:   0.90
 SVM decision value:   2.79
 SVM RNA-class probability: 0.997042
 Prediction: RNA

######################################################################

>hg17.chr10/130490515-130490395
ACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUCCAUCCCUAAUGGAAGUCAAACAUGACACCGGCAAGAUAAAACACAGU
....(((((.((...((((.((((.((((.....))))...)))).))))......)).)))))(((....(((((.....))))).((((....)))).......)))........... ( -27.20)
>canFam1.chr28/40556702-40556582
ACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUCCAUCCCUAAUGGAAGUCAAACAUGACACCGGCGAGAUAGAACACAGU
....(((((.((...((((.((((.((((.....))))...)))).))))......)).)))))(((((..(((((.....))))).((((....)))).........)))))....... ( -29.90)
>mm5.chr7/123926798-123926678
AUACCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUCCUGAAUUCAUGAAAACCCACAGGUCUGUAAUCCAUCCCUAAUGGAAGUCAAACAUGACACGAGCAAGAUGAAACACAGU
....(((((.((...((((.((((.((((.....))))...)))).))))......)).))))).((((....((((((....))..((((....))))........))))....)))). ( -28.90)
>rn3.chr1/196166437-196166317
AUACCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUCCUGAAUUCAUGAAAACCCACAGGUCUGUAAUCCAUCCCUAAUGGAAGUCAAACAUGACACCAGCAAGAUGAAACACAGU
....(((((.((...((((.((((.((((.....))))...)))).))))......)).))))).((((....((((.....(((..((((....)))).)))....))))....)))). ( -30.10)
>galGal2.chr6/317-197
ACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUACAUCCCUAAUGGAAGUCAAACAUGACACCCUAGAGAUAAAACACAGU
....(((((.((...((((.((((.((((.....))))...)))).))))......)).)))))..........(((.(((..((..((((....))))..))))).))).......... ( -26.50)
>consensus
ACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUCCAUCCCUAAUGGAAGUCAAACAUGACACCAGCAAGAUAAAACACAGU
....(((((.((...((((.((((.((((.....))))...)))).))))......)).)))))(((....(((((.....))))).((((....)))).......)))........... (-25.62 = -25.82 +   0.20) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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