Structure #32373
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr10 |
| Strand | - |
| Position | 130,490,435 - 130,490,555 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 93 |
| Columns | 120 |
| Mean single MFE | -24.84 |
| Consensus MFE | -21.2 |
| Combinations/base pair | 27 / 25 = 1.08 |
| SCI | 0.85 |
| z-score | -1.21 |
| RNA class probability | 0.512711 |
This structure is part of cluster 15670
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 93.00 Mean single sequence MFE: -24.84 Consensus MFE: -21.20 Energy contribution: -20.88 Covariance contribution: -0.32 Mean z-score: -1.21 Structure conservation index: 0.85 SVM decision value: -0.04 SVM RNA-class probability: 0.512711 Prediction: RNA ###################################################################### >hg17.chr10/130490555-130490435 CAGGUUCCUUCCUCCAAAGCUGUGUUCUCACAUUCCUCACACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUCCAUCCCU .(((................((((....))))............(((((.((...((((.((((.((((.....))))...)))).))))......)).))))).............))) ( -23.10) >canFam1.chr28/40556741-40556622 CAGGUCCCUUCCUCCAAAGCUGUGUUCUUGCAUUCUCACACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUCCAUCCCU .(((................((((............))))...(((((.((...((((.((((.((((.....))))...)))).))))......)).))))).............))) ( -21.90) >mm5.chr7/123926838-123926718 CAGGUUCCUUCCUCCAGAGCUGUGUUCUUACAAGCUUCCCAUACCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUCCUGAAUUCAUGAAAACCCACAGGUCUGUAAUCCAUCCCU .(((......))).((((.(((((.......((((((.(........).))))))((((.((((.((((.....))))...)))).))))........))))).))))............ ( -27.60) >rn3.chr1/196166477-196166357 CAGGUCCCUUCCUCCAGAGCUGUGUUCUUACAUGCUUCCCAUACCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUCCUGAAUUCAUGAAAACCCACAGGUCUGUAAUCCAUCCCU .(((......))).((((((((((....)))).)).........(((((.((...((((.((((.((((.....))))...)))).))))......)).)))))))))............ ( -27.10) >galGal2.chr6/357-237 CAGGUUCCUUCCUACGAAGCAGUGUUCUUACAUUCCUCACACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUACAUCCCU .(((......)))..((.(.(((((....)))))).))......(((((.((...((((.((((.((((.....))))...)))).))))......)).)))))................ ( -24.50) >consensus CAGGUUCCUUCCUCCAAAGCUGUGUUCUUACAUUCCUCACACCCCCUGUAGGCUUUGAAAUCAGUGUUCAAAGUGGACUUUCUGAAUUCAUGAAAACCCACAGGUCUAUAAUCCAUCCCU .(((......)))........(((....))).............(((((.((...((((.((((.((((.....))))...)))).))))......)).)))))................ (-21.20 = -20.88 + -0.32)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
