Structure #32809

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	+
Position	114,946 - 115,057
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.23
Columns	112
Mean single MFE	-45.27
Consensus MFE	-30.64
Combinations/base pair	43 / 35 = 1.23
SCI	0.68
z-score	-2.14
RNA class probability	0.855881

This structure is part of cluster 15889

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 112
 Columns: 112
 Strand: +
 Mean pairwise identity:  84.23
 Mean single sequence MFE: -45.27
 Consensus MFE: -30.64
 Energy contribution: -32.08
 Covariance contribution:   1.44
 Mean z-score:  -2.14
 Structure conservation index:   0.68
 SVM decision value:   0.81
 SVM RNA-class probability: 0.855881
 Prediction: RNA

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>hg17.chr11/114946-115057
CCCUACGGCCCCAACCCCUGGGGAUGGGGGCCCAGGGACGCCUUCCAAGGUGGCCUGUUUCCUCCCAAUGGAUCCUGCCACCUUCUGGUGCAAGAGACCUGAAAGUGUGGG
.(((((((((((..((....))....))))))((((..((((....((((((((..(..(((.......)))..).))))))))..)))).......)))).....))))) ( -50.80)
>canFam1.chr1/611-499
CACUACGGCCCCCACCCCCUGGGGCUGGGGGCCCAGUGACACCUUCCAAGGCCACCCGGUUCCUUCCAACGGAUCCUGCGGCUUUCCGACGCAAGAGACCUGAAAGCGUGGG
((((..(((((((((((....))).)))))))).)))).........((((((.(..((.(((.......))).)).).))))))((.((((.((....))....)))).)) ( -48.20)
>mm5.chr7/493-605
CACUACGGCCCCCACCCCCUGGAGCCGGGGGCCCAGCAACACCUUCCAAGGCCACUCGGUUUCCUCCUACGGAUUCUGCCACCUUUCGGCGCAAGAGACCUGAAAGUGUUGG
......(((((((.(((...)).)..)))))))...((((((.(((..(((...(((((..(((......)))..))(((.......)))....))).)))))).)))))). ( -39.10)
>rn3.chr1/493-605
CACUACGGCCCCCACCUCCUGGAGCUGGGGGCCCAACAACACCUUCCAAGGCCACUCGGUUUCUUCCUACGGAUUCUGCCACCUUUCGGCGCAAGAGACCUGAAAGUGUUGG
......((((((((.(((...))).))))))))...((((((.(((..((....)).((((((((.(....).....(((.......)))..)))))))).))).)))))). ( -43.00)
>consensus
CACUACGGCCCCCACCCCCUGGAGCUGGGGGCCCAGCAACACCUUCCAAGGCCACCCGGUUCCUUCCAACGGAUCCUGCCACCUUCCGGCGCAAGAGACCUGAAAGUGUGGG
......((((((((.(((...))).))))))))...((((((.(((...((....))((((((((.(..((((...........))))..).)))))))).))).)))))). (-30.64 = -32.08 +   1.44) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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