Structure #32811

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	114,946 - 115,057
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.23
Columns	112
Mean single MFE	-56.23
Consensus MFE	-48.64
Combinations/base pair	55 / 40 = 1.38
SCI	0.87
z-score	-3.23
RNA class probability	0.998033

This structure is part of cluster 15889

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 112
 Columns: 112
 Strand: +
 Mean pairwise identity:  84.23
 Mean single sequence MFE: -56.23
 Consensus MFE: -48.64
 Energy contribution: -46.83
 Covariance contribution:  -1.81
 Mean z-score:  -3.23
 Structure conservation index:   0.87
 SVM decision value:   2.99
 SVM RNA-class probability: 0.998033
 Prediction: RNA

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>hg17.chr11/115057-114946
CCCACACUUUCAGGUCUCUUGCACCAGAAGGUGGCAGGAUCCAUUGGGAGGAAACAGGCCACCUUGGAAGGCGUCCCUGGGCCCCCAUCCCCAGGGGUUGGGGCCGUAGGG
...((.(((((.((((....).)))..((((((((....(((....)))(....)..)))))))).))))).))(((((((((((.((((....)))).)))))).))))) ( -53.90)
>canFam1.chr1/499-611
CCCACGCUUUCAGGUCUCUUGCGUCGGAAAGCCGCAGGAUCCGUUGGAAGGAACCGGGUGGCCUUGGAAGGUGUCACUGGGCCCCCAGCCCCAGGGGGUGGGGGCCGUAGUG
..(((.((((((((((.((((((.(.....).))).((.(((.......))).))))).)))).))))))))).(((((((((((((.(((....))))))))))).))))) ( -56.90)
>mm5.chr7/605-493
CCAACACUUUCAGGUCUCUUGCGCCGAAAGGUGGCAGAAUCCGUAGGAGGAAACCGAGUGGCCUUGGAAGGUGUUGCUGGGCCCCCGGCUCCAGGGGGUGGGGGCCGUAGUG
.(((((((((((((((.((((((((....))))......(((......)))...)))).)))))..))))))))))(((((((((((.(((....))))))))))).))).. ( -58.00)
>rn3.chr1/605-493
CCAACACUUUCAGGUCUCUUGCGCCGAAAGGUGGCAGAAUCCGUAGGAAGAAACCGAGUGGCCUUGGAAGGUGUUGUUGGGCCCCCAGCUCCAGGAGGUGGGGGCCGUAGUG
.(((((((((((((((.((((((((....))))......(((...)))......)))).)))))..))))))))))...((((((((.(((...))).))))))))...... ( -56.10)
>consensus
CCAACACUUUCAGGUCUCUUGCGCCGAAAGGUGGCAGAAUCCGUAGGAAGAAACCGAGUGGCCUUGGAAGGUGUCGCUGGGCCCCCAGCCCCAGGGGGUGGGGGCCGUAGUG
...(((((((((((((.((((((((....))))......(((...)))......)))).)))))..))))))))(((((((((((((.(((...))).)))))))).))))) (-48.64 = -46.83 +  -1.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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