Structure #33717
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr11 |
| Strand | + |
| Position | 13,693,282 - 13,693,393 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 70.65 |
| Columns | 120 |
| Mean single MFE | -28.56 |
| Consensus MFE | -12.3 |
| Combinations/base pair | 34 / 24 = 1.42 |
| SCI | 0.43 |
| z-score | -1.88 |
| RNA class probability | 0.834136 |
This structure is part of cluster 16399
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 70.65 Mean single sequence MFE: -28.56 Consensus MFE: -12.30 Energy contribution: -12.34 Covariance contribution: 0.04 Mean z-score: -1.88 Structure conservation index: 0.43 SVM decision value: 0.73 SVM RNA-class probability: 0.834136 Prediction: RNA ###################################################################### >hg17.chr11/13693282-13693393 AGUAAAUACACUAUGUAUUGGUAAGGUGGUGGCAGCUUGCUGGAGAGAUGAAAAAAAUCACUAGCAUGAGCUUUACCUUUAGAUUUACUCACCUGAUUAAUCACAAUCAGA (((((((..((((.....)))).....(((((.((((((((((.((..(....)...)).))))))..))))))))).....)))))))...((((((......)))))). ( -27.20) >canFam1.chr21/38836218-38836335 AGUAAAUACACCUAUAUAUUGGUAAGGUGGUGGAAGCUUGCUGGAGAGACAAAAAGUCCGCUAGCAUGAGCUUUACCUAUAGAAUUACUAACCUGAUUAAUCACAAUCACAAUCAGG ..................(((((((.((((..((((((((((((.(.(((.....)))).))))))..))))))..))))....)))))))(((((((............))))))) ( -32.60) >mm5.chr7/100824813-100824926 AGUAUUACACUGUGUAUUGGUAAGGUGGUGGAAGCUUGCUGGAGAGACACCAUGUCGCUAGCAUGAGCUUACUUUUAGAAUUACUAACCCGAUGAAGUGCAAUCACAAUCAAG .(((((.((((...((((((...(((((((((((((((((((...(((.....))).))))))..))))).))......))))))...)))))).)))).))).))....... ( -30.60) >rn3.chr1/171543019-171543132 AGUAAUACAUUGUGUAUUGGUAAGGUGGCGGAAGCUUGCUAGAAAGACACCAUGUCGCUAGCAUGAGCUUACUUUUAGAAUUACUAACCUAAUUAAGUGCAAUCACAAUCAAG ........((((((.(((((((((.((((....)))((((((...(((.....))).))))))..).)))))..((((.....))))............)))))))))).... ( -29.10) >galGal2.chr5/51319441-51319347 GCUAGAAGUGUCUUGUUGGUAAGGUGGUGGAGACUUGUGAAGAGGAUGUGGCAUGGGUCCUGUCUAGAUUUACUAACUAUGAGCAAUAACAAUC ((((((....))).(((((((((..((..(.((((..((..(......)..))..)))))..))....)))))))))....))).......... ( -23.30) >consensus AGUAAAUACA_CUAUGUAUUGGUAAGGUGGUGGAAGCUUGCUGGAGAGAC__AAAAAGU_CGCUAGCAUGAGC_UUACCUUUAGAAUUACUAACC_UGAU_AA___CAAUCACAAUCAAG ..................(((((((...(((((.((((((((((....((.......))...))))))..))))))))).......)))))))........................... (-12.30 = -12.34 + 0.04)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
