Structure #33724
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr11 |
| Strand | - |
| Position | 13,693,393 - 13,693,511 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 79.13 |
| Columns | 120 |
| Mean single MFE | -34.74 |
| Consensus MFE | -23.68 |
| Combinations/base pair | 47 / 38 = 1.24 |
| SCI | 0.68 |
| z-score | -3.75 |
| RNA class probability | 0.999813 |
This structure is part of cluster 16399
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.13 Mean single sequence MFE: -34.74 Consensus MFE: -23.68 Energy contribution: -26.12 Covariance contribution: 2.44 Mean z-score: -3.75 Structure conservation index: 0.68 SVM decision value: 4.14 SVM RNA-class probability: 0.999813 Prediction: RNA ###################################################################### >hg17.chr11/13693511-13693393 AACCAUGAUGUAGGACAUUUCCUAUAUUAUGGAAUUUUGGAGGAUGAACGACCCAAUACGAUGUGAUCCAUAGUUAGUGUCCCCAAAGAUCUCCAAAUUCUAAGAAAUGUCCUAGCAU .......((((((((((((((.((.....((((.((((((.((((.(((.......(((...))).......)))...))))))))))...)))).....)).)))))))))).)))) ( -29.74) >canFam1.chr21/38836454-38836335 AACCUUGAUGCUGGACAUUUCCUCUACUAUGGGAUUCUGAAGGAUCAAUGGCCCAAUAAGAAUGAGAUCCACAAUUAGACUCCCCAAAUAUCCUUAAUUUCUAAAAAAUGUCCUAGCAU .......(((((((((((((..........((((.(((((.(((((...................)))))....))))).)))).........(((.....))).)))))))).))))) ( -27.01) >mm5.chr7/100825043-100824926 AAUCCUGAAGUAGGACAUUUCCUAUUAUAAUGAGAUUUUGGAGAAUCAAUGACCCAAUAUGAUGAGGUCCAUUCUUGGCCUCCAAACAUCUCCAAUUUCUAGGAAAUGUCCUGGCAU .........((((((((((((((.........(((..(((((((((((((......)).))))((((.(((....)))))))......)))))))..))))))))))))))).)).. ( -41.10) >rn3.chr1/171543249-171543132 AAUCCUGAAGUGGGAUAUUUCCUAGUAUGAUGGGAUUUUGGAGAAUCGAUGACCCAAUAAGAUGAGGUCCAUUCUUGGCCUCCAAACAUCUCCAACUUCUAGGAAAUGUCCUGGCAU ...........((((((((((((((...(.(((((((((((((....((.((((((......)).))))...)).....))))))).))).))).)..))))))))))))))..... ( -41.10) >consensus AACCCUGAAGUAGGACAUUUCCUAU_AUUAUGGGAUUUUGGAGAAUCAAUGACCCAAUAAGA_UGAGAUCCAUACUUAGC__CCCCAAACAUCUCCAAUUUCUAAGAAAUGUCCUAGCAU .........(((((((((((((((.......((((((((((((..(((((((((((.......)).))))....)))))...))))))).))))).......))))))))))))).)).. (-23.68 = -26.12 + 2.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
