Structure #33729

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	+
Position	13,693,511 - 13,693,625
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	77.68
Columns	120
Mean single MFE	-29.4
Consensus MFE	-19.43
Combinations/base pair	40 / 29 = 1.38
SCI	0.66
z-score	-1.75
RNA class probability	0.738501

This structure is part of cluster 16399

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.68
 Mean single sequence MFE: -29.40
 Consensus MFE: -19.43
 Energy contribution: -20.12
 Covariance contribution:   0.69
 Mean z-score:  -1.75
 Structure conservation index:   0.66
 SVM decision value:   0.44
 SVM RNA-class probability: 0.738501
 Prediction: RNA

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>hg17.chr11/13693511-13693625
GUCAUUGUUAUUAUAAGCUGAAAUUAAGCCCUUCUCUCCCUCUUAAAAACCUAGGGAUGAGUUUGUAUAGGGGAUUAAGGGCAAAAGUUUUGCUUCAAAUGGAUGGUGCAGUUU
(.(((..((.....((((.((((((..((((((...(((((..((.(((((.......).)))).))..)))))..))))))...))))))))))......))..))))..... ( -29.70)
>canFam1.chr21/38836454-38836569
GUCAUUGUUAUUAUAAGCUGAAAUUGAGCCCGUCUCUCUCCCUUAAAAACUUAGAGGUGAGUCUAUAGGGGAUUAAGGGCAAAAUGUUUUGCCCUGUGAGUGGAUUGUGCAGUUU
..............((((((....(((..(((.(((.((((((((.(.(((((....))))).).)))))))...((((((((....))))))))).)))))).)))..)))))) ( -32.60)
>mm5.chr7/100825043-100825162
GUCAUUGUUAUUAUAAGCUGAAAUUGAAUCUCUUCCCUCUCUCCCUUAAUAAUCUAGGGGUGAGUUUUUAUGGGGGAGUCAGAGUAAAAUAUUUUGCUUUAAAGUAGAUGGUUUAGUUU
..............((((((((.....((((((((((((((.((((((......)))))).))).......)))))))..((((((((....)))))))).....))))..)))))))) ( -31.11)
>rn3.chr1/171543249-171543357
GUCAUUGUUAUUAUAAGCUGAAGUUGAGUCUCUCCCCUCUAUCUAGGGGUGAGUUUUUACAGGGGAUUUACAGUAAAAUAUUUUGCUUUAAAGUAGAUGGUUUAGUUU
..............((((((((((.(((.(((.(((((......))))).))).))).)).....((((((((((((....)))))).....))))))..)))))))) ( -24.20)
>consensus
GUCAUUGUUAUUAUAAGCUGAAAUUGAGCCC_U___CUCUCCCCCUUAAAAACCUAGGGGUGAGUUUUUAUAGGGGAUUAAGAGCAAAAUAUUUUGCUUUA_AAGUAGAUGGUGCAGUUU
..............((((((((......((((......(((.((((((......)))))).))).......)))).....((((((((....))))))))............)))))))) (-19.43 = -20.12 +   0.69)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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