Structure #34330
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr11 |
Strand | + |
Position | 18,681,135 - 18,681,241 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 77.65 |
Columns | 120 |
Mean single MFE | -34.43 |
Consensus MFE | -24.71 |
Combinations/base pair | 39 / 28 = 1.39 |
SCI | 0.72 |
z-score | -3.05 |
RNA class probability | 0.999664 |
This structure is part of cluster 16746
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 77.65 Mean single sequence MFE: -34.43 Consensus MFE: -24.71 Energy contribution: -23.15 Covariance contribution: -1.56 Mean z-score: -3.05 Structure conservation index: 0.72 SVM decision value: 3.85 SVM RNA-class probability: 0.999664 Prediction: RNA ###################################################################### >hg17.chr11/18681135-18681241 GGGUUUUAAGACCCAAGGCACAUUCAAUGCAAGGGGAGCAAGGAUGGGACAACUCCAUCUUCUGCUGCCCAUGUGAAAAAUAAUAAAAAUCAAGAGCCAUUGGCUG (((((....)))))..............(((.(((.((((((((((((.....)))))))).)))).))).)))....................((((...)))). ( -34.70) >mm5.chr7/34463211-34463325 GGGUCUUAGACCCAAAGCACAGUCAAUGCAAGGGGAGCGAGGAUGGGGUAACUCCAUCCUCUACUGCCCAUGUGAAAAAAUAAAAUAAAAUAAAAACCUAAGGGCCAUUGGCUU (((((...))))).......((((((((...(((.((.((((((((((...))))))))))..)).)))...........................((....)).)))))))). ( -39.60) >rn3.chr1/97686869-97686985 GGGUCUUAAGACCCGAGGCACAGUCAAUGCAAGCGGAGUAAGGAUGGGGUAACUCCAUCCUCUACUGCCCAUGUGAAAAAAAUAAAAUUAAAUUAAAACCCAAGGUCUGUUGGUUU (((((....)))))(((.(((((.....(((.(.(((((((((((((((...))))))))).)))).))).))).......................(((...)))))).)).))) ( -32.40) >canFam1.chr21/43335364-43335475 GGGUCUUAAGACCUAAGGCACAUUCAAUGCAAAAGGAGCAAGGAUGGGUGGGACAACUCUAUCCCUUGCUGCUUACGUGAACAAAAAAAUAAAAACCAAGGGCCAUCGCUG (((((....)))))..(((...((((......(((.(((((((((((((......)).)))).))))))).)))...))))..............(....))))....... ( -31.00) >consensus GGGUCUUAAGACCCAAGGCACAGUCAAUGCAAGGGGAGCAAGGA____UGGGACAACUCCAUCCUCUACUGCCCAUGUGAAAA_AA______AAAAUAAAAACC_AAGGGCCAUUGGCUG (((((....)))))..(((.........(((.(((.((((((((....((((.....)))))))).)))).))).)))........................((...)).......))). (-24.71 = -23.15 + -1.56)