Structure #34337
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr11 |
| Strand | - |
| Position | 18,681,211 - 18,681,318 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 75.04 |
| Columns | 120 |
| Mean single MFE | -35.93 |
| Consensus MFE | -20.75 |
| Combinations/base pair | 29 / 22 = 1.32 |
| SCI | 0.58 |
| z-score | -2.12 |
| RNA class probability | 0.935303 |
This structure is part of cluster 16746
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.04 Mean single sequence MFE: -35.93 Consensus MFE: -20.75 Energy contribution: -21.50 Covariance contribution: 0.75 Mean z-score: -2.12 Structure conservation index: 0.58 SVM decision value: 1.24 SVM RNA-class probability: 0.935303 Prediction: RNA ###################################################################### >hg17.chr11/18681318-18681211 GACAGCCAGAGCCUCUGGCACCAUGCCCCCAUGCCCUCUCCAAGAUAGGCAUGUGCCACACAGGCCCACAAGCAGGGCAGCCAAUGGCUCUUGAUUUUUAUUAUUUU .....(.((((((..((((....(((((.((((((.((.....))..)))))).(((.....))).........)))))))))..)))))).).............. ( -37.20) >mm5.chr7/34463402-34463286 GACAAGCAGGGCUUCUGGCACCAUGCCUCUACCCCCUGUCUGGGACAGGCACGUGCCACACAGGCAGACAAGUCAGGAAGCCAAUGGCCCUUAGGUUUUUAUUUUAUUUUAUUUUU (((....((((((..((((.((.(((((.....(((.....)))...(((....)))....)))))((....)).))..))))..))))))...)))................... ( -36.50) >rn3.chr1/97687062-97686945 GACAACCAGGGCUCCUGGCACCAUGCCUCCACCCCCUGUCUGGGACAGGCACGUGCCACACAGGCAGACAAGUUAGGAAACCAACAGACCUUGGGUUUUAAUUUAAUUUUAUUUUUU .....((((((((((((((((..(((((.....(((.....)))..))))).)))))....))).))....(((.(....).)))...))))))....................... ( -34.00) >canFam1.chr21/43335554-43335444 GACAUCCAGGGCCCUGGCACCAUGCCCCCAUACCCUCCUCUCCAGGACAGGCACAUGCCACACAGGGAGAUAAGCAGGCCAGCGAUGGCCCUUGGUUUUUAUUUUUUUGU .....(((((((((((((....(((.......(((((((....))))..(((....))).....)))......))).)))))....))))).)))............... ( -36.02) >consensus GACAACCAGGGCCUCUGGCACCAUGCCCCCACCCCCUC___UCCAGGACAGGCACGUGCCACACAGGCAGACAAGCAAGGAAGCCAAUGGCCCUU_GGUUUUUAUUUU______UU_UUU .......((((((((((((....((((......(((........)))...(((....))).....)))).....))))))........)))))).......................... (-20.75 = -21.50 + 0.75)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
