Structure #34337

Summary

Genome/Assembly hg17
Chromosome/Contig chr11
Strand -
Position 18,681,211 - 18,681,318
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 75.04
Columns 120
Mean single MFE -35.93
Consensus MFE -20.75
Combinations/base pair 29 / 22 = 1.32
SCI 0.58
z-score -2.12
RNA class probability 0.935303

This structure is part of cluster 16746

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  75.04
 Mean single sequence MFE: -35.93
 Consensus MFE: -20.75
 Energy contribution: -21.50
 Covariance contribution:   0.75
 Mean z-score:  -2.12
 Structure conservation index:   0.58
 SVM decision value:   1.24
 SVM RNA-class probability: 0.935303
 Prediction: RNA

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>hg17.chr11/18681318-18681211
GACAGCCAGAGCCUCUGGCACCAUGCCCCCAUGCCCUCUCCAAGAUAGGCAUGUGCCACACAGGCCCACAAGCAGGGCAGCCAAUGGCUCUUGAUUUUUAUUAUUUU
.....(.((((((..((((....(((((.((((((.((.....))..)))))).(((.....))).........)))))))))..)))))).).............. ( -37.20)
>mm5.chr7/34463402-34463286
GACAAGCAGGGCUUCUGGCACCAUGCCUCUACCCCCUGUCUGGGACAGGCACGUGCCACACAGGCAGACAAGUCAGGAAGCCAAUGGCCCUUAGGUUUUUAUUUUAUUUUAUUUUU
(((....((((((..((((.((.(((((.....(((.....)))...(((....)))....)))))((....)).))..))))..))))))...)))................... ( -36.50)
>rn3.chr1/97687062-97686945
GACAACCAGGGCUCCUGGCACCAUGCCUCCACCCCCUGUCUGGGACAGGCACGUGCCACACAGGCAGACAAGUUAGGAAACCAACAGACCUUGGGUUUUAAUUUAAUUUUAUUUUUU
.....((((((((((((((((..(((((.....(((.....)))..))))).)))))....))).))....(((.(....).)))...))))))....................... ( -34.00)
>canFam1.chr21/43335554-43335444
GACAUCCAGGGCCCUGGCACCAUGCCCCCAUACCCUCCUCUCCAGGACAGGCACAUGCCACACAGGGAGAUAAGCAGGCCAGCGAUGGCCCUUGGUUUUUAUUUUUUUGU
.....(((((((((((((....(((.......(((((((....))))..(((....))).....)))......))).)))))....))))).)))............... ( -36.02)
>consensus
GACAACCAGGGCCUCUGGCACCAUGCCCCCACCCCCUC___UCCAGGACAGGCACGUGCCACACAGGCAGACAAGCAAGGAAGCCAAUGGCCCUU_GGUUUUUAUUUU______UU_UUU
.......((((((((((((....((((......(((........)))...(((....))).....)))).....))))))........)))))).......................... (-20.75 = -21.50 +   0.75) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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