Structure #35776
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr11 |
Strand | - |
Position | 41,023,855 - 41,023,944 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 85.66 |
Columns | 89 |
Mean single MFE | -27.25 |
Consensus MFE | -19.34 |
Combinations/base pair | 33 / 27 = 1.22 |
SCI | 0.71 |
z-score | -3.19 |
RNA class probability | 0.981906 |
This structure is part of cluster 17594
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 89 Columns: 89 Strand: + Mean pairwise identity: 85.66 Mean single sequence MFE: -27.25 Consensus MFE: -19.34 Energy contribution: -19.40 Covariance contribution: 0.06 Mean z-score: -3.19 Structure conservation index: 0.71 SVM decision value: 1.90 SVM RNA-class probability: 0.981906 Prediction: RNA ###################################################################### >hg17.chr11/41023944-41023855 ACCCACAGGGUGCUUUUGGACUCACCCUUAUCAAAGUCUCACCUCUCACUGAGAUAGGAAAAUACUUUCUAGAUGGAAGUCAGUACCCU ......((((((((....((((..((...(((...((((((........)))))).(((((....))))).))))).)))))))))))) ( -23.60) >mm5.chr2/85077705-85077792 ACCCACAGGGUGCUCUUUGAGUCACCCUUUCAAAGGCACACUGCCCACUGAGUGAGGAAAAUAUUUCCAGACGGAAGUCACCACCCU ...((((((((((((...))).)))))).(((..(((.....)))...)))))).((((.....)))).(((....)))........ ( -28.50) >rn3.chr3/89667456-89667543 ACCCACAGGGUACUCUUUGAGUCACCCUUUCAAAGGCACACUGCCCACUGAGUGAGGAAAAUAUUUCCAGAUGGAAGUCAGCACCCU .((((((((((((((...)))).))))).(((..(((.....)))...)))))).)).....((((((....))))))......... ( -24.80) >canFam1.chr18/27526726-27526814 ACCCACAGGGUGCUCUUUGACUCACCUCAUCAAAGGCUCACGUCUCUCUGAGCUAGGAAAAUGCUUUCCAGAUGGAAGUCAGCACCCU ......((((((((....((((....(((((...((((((........)))))).(((((....))))).))))).)))))))))))) ( -32.10) >consensus ACCCACAGGGUGCUCUUUGACUCACCCUU_UCAAAGGCACACUGCCCACUGAGUGAGGAAAAUA_UUUCCAGAUGGAAGUCAGCACCCU ......((((((((((((((..........))))))(((((........)))))..(((((....))))).(((....))))))))))) (-19.34 = -19.40 + 0.06)